Tonsillitis Primary care
Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou
PH814 / 2248 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/2001 to 31/01/2021Coding SystemRead codes v2SNOMED CT codesCollectionsBREATHEPhenotype LibraryTagsNo dataDefinition
The aim of this research work was to identify relevant diagnosis codes available in routine electronic health records from primary and secondary care settings in the UK. We looked for relevant codes in code repositories such as the University of Cambrigdge Primary Care Unit, Manchester Clinical Codes, HDR UK National Phenomics Resource Project, Oxford-RCGP RSC, OpenSAFELY and LSHTM Data Compass. We also searched for peer-reviewed studies published via PubMed in the last 12 months for any relevant codes. Please note that these codes are not intended to be mandatory, but are to be used as a starting point for the identification of Tonsillitis in routine electronic health record. Therefore, each study may differ in the sensitivity and specificity of the coding required. - No validations available
Implementation
Implementation
According to NHS, tonsillitis is an infection of the tonsils at the backof your throat. It is a common childhood illness, but teenagers and adults can get it too.
https://www.nhs.uk/conditions/tonsillitis/
Not found code search
Clinical Code List
PUBLISHED - 34 Codes
PUBLISHED - 26 Codes
PUBLISHED - 31 Codes
PUBLISHED - 23 Codes
Publication
Publications in 2020-2021 identified in PubMed
Sanders O, Bolton L, Nemeth Z, Hardy A, Meghji S. A 4-year retrospective study of tonsillectomy rate and admission rate of tonsillitis and complications in the East of England and nationally. Eur Arch Otorhinolaryngol. 2021 Jul;278(7):2613-2618. doi: 10.1007/s00405-020-06591-7. Epub 2021 Jan 9. PMID: 33420839.
(DOI:10.1007/s00405-020-06591-7)
Citation Example
Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou. PH814 / 2248 - Tonsillitis Primary care. Phenotype Library [Online]. 04 August 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH814/version/2248/detail/. [Accessed 31 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH814/version/2248/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH814',
version_id=2248
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH814',
version_id=2248
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH814/version/2248/export/codes/?format=json CSV site_root/phenotypes/PH814/version/2248/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH814',
version_id=2248
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH814',
version_id=2248
)Version History