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Trancheitis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

Type
Disease or syndrome
ID
PH816
Version ID
2250
Valid event data range
01/01/2001 to 31/01/2021
Sex
Female/Male
Agreement Date
2022-01-21
Coding system
Read codes v2 SNOMED CT codes
Tags /Collections
BREATHE Phenotype Library

Definition

The aim of this research work was to identify relevant diagnosis codes available in routine electronic health records from primary and secondary care settings in the UK. We looked for relevant codes in code repositories such as the University of Cambrigdge Primary Care Unit, Manchester Clinical Codes, HDR UK National Phenomics Resource Project, Oxford-RCGP RSC, OpenSAFELY and LSHTM Data Compass. We also searched for peer-reviewed studies published via PubMed in the last 12 months for any relevant codes. Please note that these codes are not intended to be mandatory, but are to be used as a starting point for the identification of Trancheitis in routine electronic health record. Therefore, each study may differ in the sensitivity and specificity of the coding required. - No validation available

Implementation

Not found code search


Publications

  • No publications idenified via Pubmed in the last 12 months

Clinical Code List

Rows: 20
Code Description SNOMED CT Concept ID Read v2 SNOMED CT Description ID BREATHE recommended
1.27582010000061e+16 Pharyngotracheitis 195707008 301087010 Y
106996011.0 Acute tracheitis without obstruction 64369009 H041000 106996011 Y
107009017.0 Acute laryngotracheitis 64375000 H042.00 107009017 Y
13306011.0 Chronic tracheitis 7457009 H31y000 13306011 Y
138105010.0 Chronic laryngotracheitis 83271005 H161.00 138105010 Y
15053015.0 Acute tracheitis with obstruction 8519009 H041100 15053015 Y
301068016.0 Acute tracheitis NOS 26650005 H041z00 44623012 Y
301074016.0 Acute laryngotracheitis NOS 64375000 H042z00 107009017 Y
301082016.0 Acute laryngitis and tracheitis NOS 276443001 H04z.00 1489963015 Y
301087010.0 Pharyngotracheitis 195707008 H052.00 301086018 Y
301241012.0 Chronic laryngitis and laryngotracheitis 195810009 H16..00 301241012 Y
3313351000006110.0 Diphtheritic laryngotracheitis 50215002 83648019 Y
3524071000006110.0 Tracheitis 62994001 104710013 Y
412576019.0 Acute laryngitis and tracheitis 276443001 H04..00 412576019 Y
412577011.0 Acute laryngitis/tracheitis 276443001 H04..99 412577011 Y
44623012.0 Acute tracheitis 26650005 H041.00 44623012 Y
63301015.0 Acute laryngotracheitis without obstruction 37948003 H042000 63301015 Y
91647017.0 Laryngotracheitis 55130001 H042.11 91647017 Y
989171000006116.0 Acute laryngitis/tracheitis 64375000 H042.99 989171000006116 Y
99622016.0 Acute laryngotracheitis with obstruction 59967003 H042100 99622016 Y
Rows: 15
Code Description CPRD GOLD Med BREATHE recommended
H04..00 Acute laryngitis and tracheitis 41324 Y
H041.00 Acute tracheitis 1257 Y
H041000 Acute tracheitis without obstruction 12476 Y
H041100 Acute tracheitis with obstruction 68867 Y
H041z00 Acute tracheitis NOS 16313 Y
H042.00 Acute laryngotracheitis 10087 Y
H042.11 Laryngotracheitis 1285 Y
H042000 Acute laryngotracheitis without obstruction 25259 Y
H042100 Acute laryngotracheitis with obstruction 69898 Y
H042z00 Acute laryngotracheitis NOS 24471 Y
H04z.00 Acute laryngitis and tracheitis NOS 16120 Y
H052.00 Pharyngotracheitis 21415 Y
H16..00 Chronic laryngitis and laryngotracheitis 11942 Y
H161.00 Chronic laryngotracheitis 7318 Y
H31y000 Chronic tracheitis 23618 Y
Rows: 20
Code Description
1.27582010000061e+16 Pharyngotracheitis
106996011.0 Acute tracheitis without obstruction
107009017.0 Acute laryngotracheitis
13306011.0 Chronic tracheitis
138105010.0 Chronic laryngotracheitis
15053015.0 Acute tracheitis with obstruction
301068016.0 Acute tracheitis NOS
301074016.0 Acute laryngotracheitis NOS
301082016.0 Acute laryngitis and tracheitis NOS
301087010.0 Pharyngotracheitis
301241012.0 Chronic laryngitis and laryngotracheitis
3313351000006110.0 Diphtheritic laryngotracheitis
3524071000006110.0 Tracheitis
412576019.0 Acute laryngitis and tracheitis
412577011.0 Acute laryngitis/tracheitis
44623012.0 Acute tracheitis
63301015.0 Acute laryngotracheitis without obstruction
91647017.0 Laryngotracheitis
989171000006116.0 Acute laryngitis/tracheitis
99622016.0 Acute laryngotracheitis with obstruction
Rows: 15
Code Description
H04..00 Acute laryngitis and tracheitis
H041.00 Acute tracheitis
H041000 Acute tracheitis without obstruction
H041100 Acute tracheitis with obstruction
H041z00 Acute tracheitis NOS
H042.00 Acute laryngotracheitis
H042.11 Laryngotracheitis
H042000 Acute laryngotracheitis without obstruction
H042100 Acute laryngotracheitis with obstruction
H042z00 Acute laryngotracheitis NOS
H04z.00 Acute laryngitis and tracheitis NOS
H052.00 Pharyngotracheitis
H16..00 Chronic laryngitis and laryngotracheitis
H161.00 Chronic laryngotracheitis
H31y000 Chronic tracheitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH816/version/2250/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH816/version/2250/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH816', '2250', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH816/version/2250/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH816/version/2250/export/codes/?format=json
CSV site_root/phenotypes/PH816/version/2250/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH816', '2250', api_client=client)

Version History

Version
ID
Name Owner Publish date
2250 Trancheitis Primary care zinnurar 2022-08-09 currently shown
1711 Trancheitis Primary care zinnurar 2022-01-21

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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