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Tuberculosis Secondary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

Type
Disease or syndrome
ID
PH819
Version ID
2253
Valid event data range
01/01/2001 to 31/01/2021
Sex
Female/Male
Agreement Date
2022-01-21
Coding system
ICD10 codes ICD11 codes
Tags /Collections
BREATHE Phenotype Library

Definition

The aim of this research work was to identify relevant diagnosis codes available in routine electronic health records from primary and secondary care settings in the UK. We looked for relevant codes in code repositories such as the University of Cambrigdge Primary Care Unit, Manchester Clinical Codes, HDR UK National Phenomics Resource Project, Oxford-RCGP RSC, OpenSAFELY and LSHTM Data Compass. We also searched for peer-reviewed studies published via PubMed in the last 12 months for any relevant codes. Please note that these codes are not intended to be mandatory, but are to be used as a starting point for the identification of Tuberculosis in routine electronic health record. Therefore, each study may differ in the sensitivity and specificity of the coding required. - No validation available

Implementation

According to NHS, tuberculosis is a bacterial infection spread through inhaling tiny droplets from the coughs or sneezes of an infected person. It mainly affects the lungs, but it can affect any part of the body, including the tummy (abdomen), glands, bones and nervous system.

https://www.nhs.uk/conditions/tuberculosis-tb/

Not found code search


Publications

  • No publications idenified via Pubmed in the last 12 months

Clinical Code List

Rows: 9
Code Description BREATHE recommended
1B10.0 Respiratory tuberculosis, confirmed Y
1B10.1 Respiratory tuberculosis, not confirmed Y
1B10.Z Respiratory tuberculosis, without mention of bacteriological or histological confirmation Y
1B14 Latent tuberculosis Y
1B1Z Tuberculosis, unspecified Y
CA60.3 Pneumoconiosis associated with tuberculosis Y
QA02.0 Observation for suspected tuberculosis, ruled out N
QA08.1 Special screening examination for respiratory tuberculosis N
QC00.2 Need for immunization against tuberculosis N
Rows: 29
Code Description BREATHE recommended
A15 Respiratory tuberculosis, bacteriologically and histologically confirmed Y
A15-A19 Tuberculosis Y
A15.0 Tuberculosis of lung, confirmed by sputum microscopy with or without culture Y
A15.1 Tuberculosis of lung, confirmed by culture only Y
A15.2 Tuberculosis of lung, confirmed histologically Y
A15.3 Tuberculosis of lung, confirmed by unspecified means Y
A15.4 Tuberculosis of intrathoracic lymph nodes, confirmed bacteriologically and histologically Y
A15.5 Tuberculosis of larynx, trachea and bronchus, confirmed bacteriologically and histologically Y
A15.6 Tuberculous pleurisy, confirmed bacteriologically and histologically Y
A15.7 Primary respiratory tuberculosis, confirmed bacteriologically and histologically Y
A15.8 Other respiratory tuberculosis, confirmed bacteriologically and histologically Y
A15.9 Respiratory tuberculosis unspecified, confirmed bacteriologically and histologically Y
A16 Respiratory tuberculosis, not confirmed bacteriologically or histologically Y
A16.0 Tuberculosis of lung, bacteriologically and histologically negative Y
A16.1 Tuberculosis of lung, bacteriological and histological examination not done Y
A16.2 Tuberculosis of lung, without mention of bacteriological or histological confirmation Y
A16.3 Tuberculosis of intrathoracic lymph nodes, without mention of bacteriological or histological confirmation Y
A16.4 Tuberculosis of larynx, trachea and bronchus, without mention of bacteriological or histological confirmation Y
A16.5 Tuberculous pleurisy, without mention of bacteriological or histological confirmation Y
A16.7 Primary respiratory tuberculosis without mention of bacteriological or histological confirmation Y
A16.8 Other respiratory tuberculosis, without mention of bacteriological or histological confirmation Y
A16.9 Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmation Y
B90.9 Sequelae of respiratory and unspecified tuberculosis N
J65 Pneumoconiosis associated with tuberculosis Y
Z03.0 Observation for suspected tuberculosis N
Z11.1 Special screening examination for respiratory tuberculosis N
Z20.1 Contact with and exposure to tuberculosis N
Z22.7 Latent tuberculosis Y
Z23.2 Need for immunization against tuberculosis [BCG] N
Rows: 6
Code Description
1B10.0 Respiratory tuberculosis, confirmed
1B10.1 Respiratory tuberculosis, not confirmed
1B10.Z Respiratory tuberculosis, without mention of bacteriological or histological confirmation
1B14 Latent tuberculosis
1B1Z Tuberculosis, unspecified
CA60.3 Pneumoconiosis associated with tuberculosis
Rows: 4
Code Description
A16.8 Other respiratory tuberculosis, without mention of bacteriological or histological confirmation
A16.9 Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmation
J65 Pneumoconiosis associated with tuberculosis
Z22.7 Latent tuberculosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH819/version/2253/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH819/version/2253/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH819', '2253', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH819/version/2253/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH819/version/2253/export/codes/?format=json
CSV site_root/phenotypes/PH819/version/2253/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH819', '2253', api_client=client)

Version History

Version
ID
Name Owner Publish date
2253 Tuberculosis Secondary care zinnurar 2022-08-09 currently shown
1717 Tuberculosis Secondary care zinnurar 2022-01-21

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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