Tuberculosis
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH87 / 174 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemRead codes v2Med codesICD10 codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
At the specified date, a patient is defined as having had 'Tuberculosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
- 'Tuberculosis' diagnosis or history of diagnosis during a consultation
OR Secondary care
- ALL diagnoses of 'Tuberculosis' or history of diagnosis during a hospitalization
Implementation
Phenoflow ID
No dataImplementation
Clinical Code List
PUBLISHED - 237 Codes
PUBLISHED - 237 Codes
PUBLISHED - 18 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
No dataCitation Requirements
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH87/version/174/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH87',
version_id=174
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH87',
version_id=174
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH87/version/174/export/codes/?format=json CSV site_root/phenotypes/PH87/version/174/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH87',
version_id=174
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH87',
version_id=174
)Version History