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Upper Respiratory Tract Infection (URTI)

Victoria Palin, Anna Molter, Miguel Belmonte, Darren M Ashcroft, Andrew White, William Welfare, Tjeerd van Staa

ID
PH906
Version ID
1891
Type
Disease or Syndrome
Data Sources
Valid event data range
01/01/2000 - 30/06/2015
Sex
♀  Female ♂  Male
Agreement Date
2019-04-30
Coding system
Read codes v2
Collections
ClinicalCodes Repository Phenotype Library
Tags
No tags

Definition

Objectives:

To examine variations across general practices and factors associated with antibiotic prescribing for common infections in UK primary care to identify potential targets for improvement and optimization of prescribing.

Methods:

Oral antibiotic prescribing for common infections was analysed using anonymized UK primary care electronic health records between 2000 and 2015 using the Clinical Practice Research Datalink (CPRD). The rate of prescribing for each condition was observed over time and mean change points were compared with national guideline updates. Any correlation between the rate of prescribing for each infectious condition was estimated within a practice. Predictors of prescribing were estimated using logistic regression in a matched patient cohort (1:1 by age, sex and calendar time).

Results:

Over 8 million patient records were examined in 587 UK general practices. Practices varied considerably in their propensity to prescribe antibiotics and this variance increased over time. Change points in prescribing did not reflect updates to national guidelines. Prescribing levels within practices were not consistent for different infectious conditions. A history of antibiotic use significantly increased the risk of receiving a subsequent antibiotic (by 22%–48% for patients with three or more antibiotic prescriptions in the past 12months), as did higher BMI, history of smoking and flu vaccinations. Other drivers for receiving an antibiotic varied considerably for each condition.

Conclusions:

Large variability in antibiotic prescribing between practices and within practices was observed. Prescribing guidelines alone do not positively influence a change in prescribing, suggesting more targeted interventions are required to optimize antibiotic prescribing in the UK.

Publications

  • Victoria Palin, Anna Molter, Darren M Ashcroft, Andrew White, William Welfare, Tjeerd van Staa, Antibiotic prescribing for common infections in UK general practice variability and drivers. Journal of Antimicrobial Chemotherapy, 74:2440-2450, 2019.

Clinical Code List

Rows: 40
Code Description Entity type Category Coding System (Read)
H0...00 Acute respiratory infections res70: URTI diagnostic Read
H04..00 Acute laryngitis and tracheitis res70: URTI diagnostic Read
H040.00 Acute laryngitis res70: URTI diagnostic Read
H040000 Acute oedematous laryngitis res70: URTI diagnostic Read
H040100 Acute ulcerative laryngitis res70: URTI diagnostic Read
H040200 Acute catarrhal laryngitis res70: URTI diagnostic Read
H040300 Acute phlegmonous laryngitis res70: URTI diagnostic Read
H040600 Acute suppurative laryngitis res70: URTI diagnostic Read
H040x00 Acute bacterial laryngitis unspecified res70: URTI diagnostic Read
H040z00 Acute laryngitis NOS res70: URTI diagnostic Read
H041.00 Acute tracheitis res70: URTI diagnostic Read
H041000 Acute tracheitis without obstruction res70: URTI diagnostic Read
H041100 Acute tracheitis with obstruction res70: URTI diagnostic Read
H041z00 Acute tracheitis NOS res70: URTI diagnostic Read
H042.00 Acute laryngotracheitis res70: URTI diagnostic Read
H042.11 Laryngotracheitis res70: URTI diagnostic Read
H042000 Acute laryngotracheitis without obstruction res70: URTI diagnostic Read
H042100 Acute laryngotracheitis with obstruction res70: URTI diagnostic Read
H042z00 Acute laryngotracheitis NOS res70: URTI diagnostic Read
H043.00 Acute epiglottitis (non strep) res70: URTI diagnostic Read
H043000 Acute epiglottitis without obstruction res70: URTI diagnostic Read
H043200 Acute obstructive laryngitis res70: URTI diagnostic Read
H043z00 Acute epiglottitis NOS res70: URTI diagnostic Read
H04z.00 Acute laryngitis and tracheitis NOS res70: URTI diagnostic Read
H05..00 Other acute upper respiratory infections res70: URTI diagnostic Read
H050.00 Acute laryngopharyngitis res70: URTI diagnostic Read
H051.00 Acute upper respiratory tract infection res70: URTI diagnostic Read
H052.00 Pharyngotracheitis res70: URTI diagnostic Read
H053.00 Tracheopharyngitis res70: URTI diagnostic Read
H054.00 Recurrent upper respiratory tract infection res70: URTI diagnostic Read
H055.00 Pharyngolaryngitis res70: URTI diagnostic Read
H05y.00 Other upper respiratory infections of multiple sites res70: URTI diagnostic Read
H05z.00 Upper respiratory infection NOS res70: URTI diagnostic Read
H05z.11 Upper respiratory tract infection NOS res70: URTI diagnostic Read
H0y..00 Other specified acute respiratory infections res70: URTI diagnostic Read
H0z..00 Acute respiratory infection NOS res70: URTI diagnostic Read
H160100 Chronic catarrhal laryngitis res70: URTI diagnostic Read
Hyu0.00 [X]Acute upper respiratory infections res70: URTI diagnostic Read
Hyu0100 [X]Acute pharyngitis due to other specified organisms res70: URTI diagnostic Read
Hyu0200 [X]Acute tonsillitis due to other specified organisms res70: URTI diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH906/version/1891/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH906/version/1891/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH906', '1891', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH906/version/1891/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH906/version/1891/export/codes/?format=json
CSV site_root/phenotypes/PH906/version/1891/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH906', '1891', api_client=client)

Version History

Version
ID
Name Owner Publish date
1891 Upper Respiratory Tract Infection (URTI) ieuan.scanlon 2022-04-04 currently shown

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