Other Psychotic Disorders and Severe Mental Illnesses

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.

PH938 / 3521 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Phenotype UUID
    excel-ADP-idO1S9D
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    SNOMED CT codesICD10 codesRead codes v3
    Data Sources
    Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP), Patient Episode Dataset for Wales (PEDW)
    Collections
    Adolescent Data Platform (ADP)DATAMINDPhenotype Library
    Tags
    No data

  2. Definition

    Psychotic disorders and severe mental illnesses that are not included as schizophrenia or bipolar disorder.

    Read code definition

    These definition has been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).

    ICD-10 definition

    Includes, among others, mapped Read codes for acute and transient psychotic disorders (F23), depressive episodes/disorders with psychotic symptoms (F32.3 and F33.3). These definition has been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).

    SNOWMED CT definition

    This definition has been created by mapping the existing Read code and ICD-10 definitions and additional exploration of SNOMED CT codes.

    Note: The SNOMED CT definition has not undergone validation yet.

    REFERENCES

    John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162.

    John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34.

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    • John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009

      (DOI:10.1016/j.schres.2018.04.009)

    • John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34. https://doi.org/10.1016/S2215-0366(21)00367-9

      (DOI:10.1016/S2215-0366(21)00367-9)

    Citation Requirements

    John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009

    Citation Example

    John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH938 / 3521 - Other Psychotic Disorders and Severe Mental Illnesses. Phenotype Library [Online]. 22 July 2024. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH938/version/3521/detail/. [Accessed 27 July 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH938/version/3521/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH938',
     version_id=3521
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH938',
     version_id=3521
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH938/version/3521/export/codes/?format=json
    CSV site_root/phenotypes/PH938/version/3521/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH938',
     version_id=3521
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH938',
     version_id=3521
    )

  7. Version History

    Version IDNameOwnerPublish date
    3521 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2024-07-22currently shown
    2965 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2023-11-13
    2961 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2023-11-13
    2953 Other Psychotic Disorders Primary Care ieuan.scanlon2023-11-08
    1955 Other Psychotic Disorders Primary Care ieuan.scanlon2022-05-05