Phenotype Library | phenotype: Other Psychotic Disorders Primary Care

Other Psychotic Disorders Primary Care

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.

PH938

Version ID

1955

Type

Disease or syndrome

Data Sources

GP dataset - Welsh Primary Care

Sex

♀ Female ♂ Male

Agreement Date

2022-04-01

Coding system

Read codes v2

Collections

Adolescent Data Platform (ADP) DATAMIND Phenotype Library

Definition

The following code list includes codes for other psychotic disorders used in the following papers (John et. al. 2018; John et. al. 2022) and reviewed by a clinician in the study (Prof Ann John). Additional Read codes for 'other psychotic disorders' that were mapped to the ICD-10 codes for acute and transient psychotic disorders (F23), depressive episodes/disorders with psychotic symptoms (F32.3 and F33.3) were added to the list as reviewed by two clinicians (Prof. Keith Lloyd and Prof. Ann John) in the study team.

Publications

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. "Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK."
Main reference link: https://www.sciencedirect.com/science/article/pii/S0920996418301981

Clinical Code List

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C2715/6846 Other Psychotic Disorders - Primary Care - Read codes v2

Rows: 34

Code	Description
146H.	h/o: psychosis
8HHs.	ref psychosis early inter ser \| referral to psychosis early intervention service
9H8..	on severe mental ullness regist \| on severe mental illness register
E11..	affective psychoses
E1124	single maj. Depress,severe+psyc \| single major depressive episode, severe, with psychosis
E1134	recurr.maj.depress.-severe+psyc \| recurrent major depressive episodes, severe, with psychosis
E11z.	other/unsp.affective psychoses \| other and unspecified affective psychoses
E11z0	unspecif.affective psych.nos \| unspecified affective psychoses nos
E11zz	other affective psychosis nos
E13..	other nonorganix psychoses
E130.	reactive depressive psychosis
E131.	acute hysterical psychosis
E132.	reactive confusion
E133.	acute paranoid reaction
E134.	psychogenic paranoid psychosis
E13y.	other reactive psychoses
E13y0	psychogenic stupor
E13y1	brief reactive psychoses nos
E13yz	other reactive psychoses nos
E13z.	nonorganic psychoses nos
E1y..	non-organic psychoses os \| other specified non-organic psychoses
E1z..	non-organic psychosis nos
Eu23.	[x] acute/transient psychot dis \| [x]acute and transient psychotoc disorders
Eu230	[x] ac polymorph psych, no schiz \| [x]acute polymorphoc psychot disord without symp of schizoph \| [x]acute polymorphic psychotic disorder without symptoms of schizophrenia
Eu231	[x] ac polymorph psych +schiz \| [x]acute polymorphoc psychot disord with symp of schizoph \| [x]acute polymorphic psychotic disorder with symptoms of schizophrenia
Eu232	[x] ac schizoph-like psych dis \| [x] acute schizophrenia-like psychotic disorder
Eu233	[x] oth ac predom delus psy dis \| [x] other acute predominantly delusional psychotic disorders
Eu23y	[x] oth ac and trans psych dis \| [x] acute and transient psychotic disorders
Eu23z	[x] ac and trand psych dis unsp \| [x] acute and transient psychotic disorder, unspecified
Eu323	[x] severe depressive + psychot \| [x] severe depressive episode with psychotic symptoms
Eu328	[x] maj dep, sev with psychot symp\| [x]major depression, severe with psychotic symptoms
Eu329	[x] sin ma dep ef sev ps ps rem \| [x] single major depre ep, severe with psych, psych in remiss \| [x] single major depressive episode, severe with psychosis, psychosis in remission
Eu32A	[x] rec ma dep ef sev ps ps rem \| [x] recurr major depre ep, severe with psych, psych in remiss \| [x] recurrent major depressive episode, severe, with psychosis, psychosis in remission
Eu333	[x] recurr dep now sever+psych \| [x] recurrent depress disorder cur epi severe with psyc symp \| [x] recurrent depressive disorder, current episode severe with psychotic symptoms

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH938/version/1955/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH938/version/1955/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH938', '1955', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH938/version/1955/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH938/version/1955/export/codes/?format=json
CSV	site_root/phenotypes/PH938/version/1955/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH938', '1955', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
1955	Other Psychotic Disorders Primary Care	ieuan.scanlon	2022-05-05	currently shown