Other Psychotic Disorders and Severe Mental Illnesses
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.
PH938 / 2961 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date RangeNo dataCoding SystemICD10 codesRead codes v2CollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
Psychotic disorders and severe mental illnesses that are not included as schizophrenia or bipolar disorder are categorised as Other psychotic disorders. The following code list includes Read codes and ICD-10 codes for other psychotic disorders used in the following papers (John et. al. 2018; John et. al. 2022) and reviewed by a clinician in the study (Prof Ann John). Read codes for 'other psychotic disorders' that were mapped to the ICD-10 codes for acute and transient psychotic disorders (F23), depressive episodes/disorders with psychotic symptoms (F32.3 and F33.3) were added to the list as reviewed by two clinicians (Prof. Keith Lloyd and Prof. Ann John) in the study team.
Implementation
No dataImplementation
Clinical Code List
PUBLISHED - 34 Codes
PUBLISHED - 24 Codes
Publication
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
(DOI:10.1016/j.schres.2018.04.009)John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. "Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK."
Main reference link: https://www.sciencedirect.com/science/article/pii/S0920996418301981
Citation Requirements
John A, Friedmann Y, DelPozo-Banos M, Frizzati A, Ford T, Thapar A. Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. Lancet Psychiatry. 2022 Jan;9(1):23-34. doi: 10.1016/S2215-0366(21)00367-9.
Citation Example
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH938 / 2961 - Other Psychotic Disorders and Severe Mental Illnesses. Phenotype Library [Online]. 13 November 2023. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH938/version/2961/detail/. [Accessed 23 November 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH938/version/2961/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH938',
version_id=2961
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH938',
version_id=2961
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH938/version/2961/export/codes/?format=json CSV site_root/phenotypes/PH938/version/2961/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH938',
version_id=2961
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH938',
version_id=2961
)Version History