Other Psychotic Disorders and Severe Mental Illnesses

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.

PH938 / 2961 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Phenotype UUID
    excel-ADP-idO1S9D
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    ICD10 codesRead codes v2
    Data Sources
    Patient Episode Dataset for Wales (PEDW)
    Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP)
    Collections
    Adolescent Data Platform (ADP)DATAMINDPhenotype Library
    Tags
    No data
    Ontology
    No data

  2. Definition

    Psychotic disorders and severe mental illnesses that are not included as schizophrenia or bipolar disorder are categorised as Other psychotic disorders. The following code list includes Read codes and ICD-10 codes for other psychotic disorders used in the following papers (John et. al. 2018; John et. al. 2022) and reviewed by a clinician in the study (Prof Ann John). Read codes for 'other psychotic disorders' that were mapped to the ICD-10 codes for acute and transient psychotic disorders (F23), depressive episodes/disorders with psychotic symptoms (F32.3 and F33.3) were added to the list as reviewed by two clinicians (Prof. Keith Lloyd and Prof. Ann John) in the study team.

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    Related publications

    • John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009

      (DOI: 10.1016/j.schres.2018.04.009)

    • John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. "Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK."

    • Main reference link: https://www.sciencedirect.com/science/article/pii/S0920996418301981

    Citation Requirements

    John A, Friedmann Y, DelPozo-Banos M, Frizzati A, Ford T, Thapar A. Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. Lancet Psychiatry. 2022 Jan;9(1):23-34. doi: 10.1016/S2215-0366(21)00367-9.

  6. Permissions

  7. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH938/version/2961/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH938',
     version_id=2961
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH938',
     version_id=2961
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH938/version/2961/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH938',
     version_id=2961
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH938',
     version_id=2961
    )

  8. Version History

    Version IDNameOwnerPublish date
    3565 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2024-12-02 10:54
    3521 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2024-07-22 13:44
    2965 Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2023-11-13 19:04
    Other Psychotic Disorders and Severe Mental Illnesses ieuan.scanlon2023-11-13 18:16
    2953 Other Psychotic Disorders Primary Care ieuan.scanlon2023-11-08 15:20
    1955 Other Psychotic Disorders Primary Care ieuan.scanlon2022-05-05 08:27