Other Psychotic Disorders and Severe Mental Illnesses
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.
PH938 / 3521 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromePhenotype UUIDexcel-ADP-idO1S9DSexBothValid Event Date RangeNo dataCoding SystemSNOMED CT codesICD10 codesRead codes v3CollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
Psychotic disorders and severe mental illnesses that are not included as schizophrenia or bipolar disorder.
Read code definition
These definition has been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).
ICD-10 definition
Includes, among others, mapped Read codes for acute and transient psychotic disorders (F23), depressive episodes/disorders with psychotic symptoms (F32.3 and F33.3). These definition has been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).
SNOWMED CT definition
This definition has been created by mapping the existing Read code and ICD-10 definitions and additional exploration of SNOMED CT codes.
Note: The SNOMED CT definition has not undergone validation yet.
REFERENCES
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162.
John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34.
Implementation
Implementation
Clinical Code List
PUBLISHED - 346 Codes
PUBLISHED - 404 Codes
PUBLISHED - 34 Codes
Publication
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
(DOI:10.1016/j.schres.2018.04.009)John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34. https://doi.org/10.1016/S2215-0366(21)00367-9
(DOI:10.1016/S2215-0366(21)00367-9)
Citation Requirements
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
Citation Example
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH938 / 3521 - Other Psychotic Disorders and Severe Mental Illnesses. Phenotype Library [Online]. 22 July 2024. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH938/version/3521/detail/. [Accessed 07 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH938/version/3521/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH938',
version_id=3521
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH938',
version_id=3521
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH938/version/3521/export/codes/?format=json CSV site_root/phenotypes/PH938/version/3521/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH938',
version_id=3521
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH938',
version_id=3521
)Version History