Phenotype Library | phenotype: Schizophrenia Primary Care

Schizophrenia Primary Care

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.

PH939

Version ID

1957

Type

Disease or syndrome

Data Sources

GP dataset - Welsh Primary Care

Sex

♀ Female ♂ Male

Agreement Date

2022-04-01

Coding system

Read codes v2

Collections

Adolescent Data Platform (ADP) DATAMIND Phenotype Library

Definition

The following code list includes codes for schizophrenia-related disorders that include schizophrenia, schizotypal and delusional disorders used in the following papers (John et. al. 2018; John et. al. 2022) and reviewed by a clinician in the study (Prof Ann John).

Publications

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. "Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK."
Main reference link: https://www.sciencedirect.com/science/article/pii/S0920996418301981

Clinical Code List

CSV

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C2716/6848 Schizophrenia - Primary Care - Read codes v2

Rows: 97

Code	Description
1464.	h/o: schizophrenia
E10..	schizophrenic disorders
E100.	simple schizophrenia
E1000	schizophrenia - unspecified \| unspecified schizophrenia
E1001	schizophrenia- subchronic \|subchronic schizophrenia
E1002	schizophrenia- chronic type \| chronic schizophrenic
E1003	schizophrenia- subchr.+acute ex \| acute exacerbation of subchronic schizophrenia
E1004	schizophrenia- chr.+acute exac.\| acute exacerbation of chronic schizophrenia
E1005	schizophrenia in remission
E100z	simple schizophrenia nos
E101.	hebephrenic schizophrenia
E1010	hebephrenia - unspecified \| unspecified hebephrenic schizophrenia
E1011	hebephrenia - subchronic \| subchronic hebephrenic schizophrenia
E1012	hebephrenia - chronic \| chronic hebephrenic schizophrenia
E1013	hebephrenia - subchr.+acute exac\| acute exacerbation of subchronic hebephrenic schizophrenia
E1014	hebephrenia - chronic+acute exac \| acute exacerbation of chronic hebephrenic schizophrenia
E1015	hebephrenia - in remission \| hebephrenic schizophrenia in remission
E101z	hebephrenic schizophrenia nos
E102.	catatonic schizophrenia
E1020	catetonia - unspecified \| unspecified catatonic schizophrenia
E1021	catetonia - subchronic \| subchronic catatonic schizophrenia
E1022	catetonia - chronic \| chronic catatonic schizophrenia
E1023	catetonia - subchr.+acute exac.\| acute exacerbation of subchronic catatonic schizophrenia
E1024	catetonia - chronic.+acute exacer.\| acute exacerbation of chronic catatonic schizophrenia
E1025	catetonia - in remission\| catatonic schizophrenia in remission
E102z	catetonic schizophrenia nos
E103.	paranoid schizophrenia
E1030	paranoid schizo., unspecified \| unspecified paranoid schizophrenia
E1031	paranoid schizo., subchronic \| subchronic paranoid schizophrenia
E1032	paranoid schizo., chronic \| chronic paranoid schizophrenia
E1033	paranoid schizo., -subchr.+ac ex\| acute exacerbation of subchronic paranoid schizophrenia
E1034	paranoid schizo., -chr.+acute ex\| acute exacerbation of chronic paranoid schizophrenia
E1035	paranoid schizo., -in remission\| paranoid schizophrenia in remission
E103z	paranoid schizophrenia nos
E104.	acute schizophrenic episode
E105.	latent schizophrenia
E1050	latent schizo.- unspecified \| unspecified latent schizophrenia
E1051	latent schizo.- subchronic \| subchronic latent schizophrenia
E1052	latent schizo.- chronic \| chronic latent schizophrenia
E1053	latent schizo.- subchr.+ac.exac\| acute exacerbation of subchronic latent schizophrenia
E1054	latent schizo.- chr.+acute exac \| acute exacerbation of chronic latent schizophrenia
E1055	latent schizo.- in remission \| latent schizophrenia in remission
E105z	latent schizophrenia nos
E106.	residual schizophrenia
E107.	schizo-affective schizophrenia
E1070	schizo-affective- unspecified \| unspecified schizo-affective schizophrenia
E1071	schizo-affective- subchronic \| subchronic schizo-affective schizophrenia
E1072	schizo-affective- chronic \| chronic schizo-affective schizophrenia
E1073	schizo-affective- subchr.+ac ex \| acute exacerbation of subchronic schizo-affective schizophrenia
E1074	schizo-affective- chr.+acute ex \| acute exacerbation of chronic schizo-affective schizophrenia
E1075	schizo-affective- in remission\| schizo-affective schizophrenia in remission
E107z	schizo-affective- schizophr.nos\| schizo-affective schizophrenia nos
E10y.	other schizophrenia
E10y0	atypical schizophrenia
E10y1	coenesthopathic schizophrenia
E10yz	other schizophrenia nos
E10z.	schizophrenia nos
E12..	paranoid states
E120.	simple paranoid state
E121.	chronic paranoid psychosis
E122.	paraphrenia
E123.	shared paranoid disorder
E12y.	other paranoid states
E12y0	paranoia querulans
E12yz	other paranoid states nos
E12z.	paranoid psychosis nos
E2122	schizotypal personality
Eu2..	[x]schizoph, schizotyp, delusion \| [x]schizophrenia, schizotypal and delusional disorders
Eu20.	[x]schizophrenia
Eu200	[x]paranoid schizophrenia
Eu201	[x] hebephrenic schizophrenia
Eu202	[x] catatonic schizophrenia
Eu203	[x] undifferentiated schizophrn \| [x]undifferentiated schizophrenia
Eu204	[x] post-schizophrenic depressn \| [x] post-schizophrenic depression
Eu205	[x] residential schizophrenia
Eu206	[x] simple schizophrenia
Eu20y	[x] other schizophrenia
Eu20z	[x] schizophrenia, unspecified
Eu21.	[x] schizotypal disorder
Eu22.	[x] persistent delusional dis \| [x]persistent delusional disorders
Eu220	[x] delusional disorder
Eu221	[x] delision misidentificat syn \| [x] delusional misidentification syndrome
Eu222	[x] cotard syndrome
Eu223	[x] paranoid state in remission
Eu22y	[x] oth persistent delusion dis \| [x] other oersistent delusional disorders
Eu22z	[x] persist delusion dis, unsp \| [x]persistent delusional disorder, unspecified
Eu24.	[x] induced delusional disorder \| [x] induced delusional disorder
Eu25.	[x] schizoaffective disorders
Eu250	[x] schizaffect dis manic type \| [x]schizoaffective disorder, manic type
Eu251	[x] schizaffect dis depres type \| [x]schizoaffective disorder, depressive type
Eu252	[x] schizaffect dis mixed type \| [x]schizoaffective disorder, mixed type
Eu25y	[x] ot schizaffective disorder \| [x]other schizoaffective disorder
Eu25z	[x] schizaffective disord unsp\| [x]schizoaffective disorder, unspecified
Eu26.	[x] nonorgan psychos in remiss\| [x]nonorganic psychosis in remission
Eu2y.	[x] ot nonorgan psychotic dis\| [x]other nonorganic psychotic disorders
Eu2z.	[x] ot nonorgan psychotic dis\| [x]other nonorganic psychotic disorders
ZV110	[v]ph - schizophrenia \| [v]personal history of schizophrenia

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH939/version/1957/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH939/version/1957/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH939', '1957', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH939/version/1957/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH939/version/1957/export/codes/?format=json
CSV	site_root/phenotypes/PH939/version/1957/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH939', '1957', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
1957	Schizophrenia Primary Care	ieuan.scanlon	2022-05-05	currently shown