Schizophrenia

John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.

PH939 / 3519 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    SNOMED CT codesICD10 codesRead codes v2
    Data Sources
    Patient Episode Dataset for Wales (PEDW)
    Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP)
    Collections
    Adolescent Data Platform (ADP)DATAMINDPhenotype Library
    Tags
    No data
    Ontology
    No data

  2. Definition

    Schizophrenia is a long-term, severe mental illness causing a range of different psychological symptoms, such as hallucinations and delusions. It includes schizophrenia, schizotypal and delusional disorders.

    ICD-10 and Read code definitions

    These definitions include schizophrenia-related disorders such as schizophrenia, schizotypal and delusional disorders. They have been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).

    SNOWMED CT definition

    This definition has been created by mapping the existing Read code and ICD-10 definitions and additional exploration of SNOMED CT codes.

    Note: The SNOMED CT definition has not undergone validation yet.

    REFERENCES

    John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162.

    John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34.

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    Related publications

    • John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009

      (DOI: 10.1016/j.schres.2018.04.009)

    • John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34. https://doi.org/10.1016/S2215-0366(21)00367-9

      (DOI: 10.1016/S2215-0366(21)00367-9)

    Citation Requirements

    John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH939/version/3519/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH939',
     version_id=3519
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH939',
     version_id=3519
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH939/version/3519/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH939',
     version_id=3519
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH939',
     version_id=3519
    )

  7. Version History

    Version IDNameOwnerPublish date
    Schizophrenia ieuan.scanlon2024-07-22 13:42
    2963 Schizophrenia ieuan.scanlon2023-11-13 18:58
    2958 Schizophrenia ieuan.scanlon2023-11-13 17:29
    2949 Schizophrenia Primary Care ieuan.scanlon2023-11-08 15:20
    1957 Schizophrenia Primary Care ieuan.scanlon2022-05-05 08:27