Schizophrenia Primary Care
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.
PH939 / 1957 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date RangeNo dataCoding SystemRead codes v2Data SourcesCollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
The following code list includes codes for schizophrenia-related disorders that include schizophrenia, schizotypal and delusional disorders used in the following papers (John et. al. 2018; John et. al. 2022) and reviewed by a clinician in the study (Prof Ann John).
Implementation
Implementation
Clinical Code List
PUBLISHED - 97 Codes
Publication
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
(DOI:10.1016/j.schres.2018.04.009)John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. "Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK."
Main reference link: https://www.sciencedirect.com/science/article/pii/S0920996418301981
Citation Example
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH939 / 1957 - Schizophrenia Primary Care. Phenotype Library [Online]. 05 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH939/version/1957/detail/. [Accessed 23 November 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH939/version/1957/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH939',
version_id=1957
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH939',
version_id=1957
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH939/version/1957/export/codes/?format=json CSV site_root/phenotypes/PH939/version/1957/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH939',
version_id=1957
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH939',
version_id=1957
)Version History