CCU000 COVID-19
Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip, Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium
PH943 / 2121 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromePhenotype UUIDGdzwkJQd7BeC8RQ5aX6c3eSexBothValid Event Date Range31/01/2020 - 31/10/2020Coding SystemICD10 codesSNOMED CT codesCollectionsBHF Data Science CentrePhenotype LibraryTagsNo dataDefinition
Implementation
Implementation
Clinical Code List
PUBLISHED - 2 Codes
PUBLISHED - 43 Codes
Publication
Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip,Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium. Linked electronic health records for research on a nationwide cohort of more than 54 million people in England data resource BMJ 2021; 373 :n826 doi:10.1136/bmj.n826 https://www.bmj.com/content/373/bmj.n826
(DOI:10.1136/bmj.n826)
Citation Example
Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip, Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium. PH943 / 2121 - CCU000 COVID-19. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH943/version/2121/detail/. [Accessed 08 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH943/version/2121/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH943',
version_id=2121
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH943',
version_id=2121
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH943/version/2121/export/codes/?format=json CSV site_root/phenotypes/PH943/version/2121/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH943',
version_id=2121
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH943',
version_id=2121
)Version History