CCU000 COVID-19

Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip, Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium

PH943 / 2121 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    31/01/2020 - 31/10/2020
    Coding System
    ICD10 codesSNOMED CT codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19), Hospital Episode Statistics Admitted Patient Care, Civil Registration - Deaths, Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT, Secondary Uses Services Payment By Results
    Collections
    BHF Data Science CentrePhenotype Library
    Tags
    No data

  2. Definition

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    • Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip,Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium. Linked electronic health records for research on a nationwide cohort of more than 54 million people in England data resource BMJ 2021; 373 :n826 doi:10.1136/bmj.n826 https://www.bmj.com/content/373/bmj.n826

      (DOI:10.1136/bmj.n826)

    Citation Example

    Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip, Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium. PH943 / 2121 - CCU000 COVID-19. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH943/version/2121/detail/. [Accessed 10 October 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH943/version/2121/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH943',
     version_id=2121
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH943',
     version_id=2121
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH943/version/2121/export/codes/?format=json
    CSV site_root/phenotypes/PH943/version/2121/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH943',
     version_id=2121
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH943',
     version_id=2121
    )

  7. Version History

    Version IDNameOwnerPublish date
    2121 CCU000 COVID-19 ieuan.scanlon2022-05-17currently shown
    1965 CCU000 COVID-19 ieuan.scanlon2022-05-09