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CCU000 Obesity

Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip, Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium

ID
PH947
Version ID
2125
Type
Disease or Syndrome
Valid event data range
31/01/2020 - 31/10/2020
Sex
♀  Female ♂  Male
Agreement Date
29-03-2020
Coding system
SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Publications

  • Angela Wood, Rachel Denholm, Sam Hollings, Jennifer Cooper, Samantha Ip,Venexia Walker, Spiros Denaxas, Ashley Akbari, Amitava Banerjee, William Whiteley, Alvina Lai, Jonathan Sterne, Cathie Sudlow, CVD-COVID-UK consortium. Linked electronic health records for research on a nationwide cohort of more than 54 million people in England data resource BMJ 2021; 373 :n826 doi:10.1136/bmj.n826 https://www.bmj.com/content/373/bmj.n826

Clinical Code List

Rows: 1
Code Description type
E66 Obesity 1
Rows: 73
Code Description type
10977641000119108 History of removal of gastric banding device (situation) 0
16093531000119101 History of adult obesity (situation) 0
161453001 H/O: obesity 0
162690006 O/E - obese 1
162864005 Body mass index 30+ - obesity 1
170794003 Initial obesity assessment 1
170795002 Follow-up obesity assessment 1
170797005 Has seen dietitian - obesity 1
170798000 Treatment of obesity changed 1
170799008 Treatment of obesity started 1
170807005 Reason for obesity therapy - occupational 1
173748000 Bypass of stomach by anastomosis of stomach to transposed jejunum 1
173911002 Bypass of jejunum 1
173913004 Bypass of jejunum by anastomosis of jejunum to ileum 1
173914005 Jejunocolostomy (& [Dewind] or [Payne] or [Scott]) 1
185741002 Attends obesity monitoring 1
185742009 Refuses obesity monitoring 1
185743004 Obesity monitoring default 1
185744005 Obesity monitoring first letter 1
185745006 Obesity monitoring second letter 1
185746007 Obesity monitoring third letter 1
185747003 Obesity monitoring verbal invite 1
185748008 Obesity monitoring telephone invite 1
185750000 Obesity monitoring check done 1
18692006 Bypass gastroenterostomy 1
190965006 Drug-induced obesity 1
190966007 Extreme obesity with alveolar hypoventilation 1
235408004 Jejunocolostomy 1
238134004 Generalized obesity 1
238136002 Morbid obesity 1
248311001 Centripetal obesity 1
248325000 Undernourished 1
265364006 Partitioning of stomach 1
265365007 Bypass of stomach by anastomosis of stomach to duodenum 1
265380001 Jejunojejunal bypass 1
265381002 Bypass of jejunum by anastomosis of jejunum to colon 1
266724001 Patient advised about weight-reducing diet 1
268522006 Obesity monitoring 1
268551005 Obesity screening 1
268916007 O/E - weight greater than 20% over ideal 1
275919002 Weight loss advised 1
276792008 Pulmonary hypertension with extreme obesity 1
284352003 Dietary advice for obesity 1
294493008 Lifelong obesity 1
296526005 Adult-onset obesit 1
302872003 Disorder of hyperalimentation 1
307818003 Weight monitoring 1
30803004 Printen and Mason operation, high gastric bypass 1
329281000119107 History of sleeve gastrectomy 0
363247006 Obesity associated disorder 1
408512008 Body mass index 40+ - severely obese (finding) 1
414574004 Laparoscopic adjustable gastric banding (procedure) 1
414916001 Obesity (disorder) 1
415530009 Simple obesity (disorder) 1
424753004 Dietary management education, guidance, and counseling (procedure) 1
426273008 Partitioning of stomach using band (procedure) 1
426559000 Removal of gastric band (procedure) 1
426738005 Duodenal switch (procedure) 1
427029008 Partitioning of stomach using staples (procedure) 1
427074001 Laparoscopic sleeve gastrectomy (procedure) 1
427980007 Sleeve gastrectomy with duodenal switch (procedure) 1
428754001 Dietary education for food intolerance (procedure) 1
429538006 History of laparoscopic adjustable gastric banding (situation) 0
442261001 Maintenance of gastric band 0
49245001 Bypass gastrojejunostomy 1
63702009 Alstrom syndrome 1
698450007 History of bypass of stomach (situation) 0
703316004 Lymphedema associated with obesity (disorder) 1
708983005 Laparoscopic bypass of stomach 1
715279006 Telehealth obesity monitoring (regime/therapy) 1
722051004 Obesity, colitis, hypothyroidism, cardiac hypertrophy, developmental delay syndrome (disorder) 1
763085007 Obesity monitoring refused 1
87604009 Sleeve resection of stomach 1

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH947/version/2125/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH947/version/2125/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH947', '2125', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH947/version/2125/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH947/version/2125/export/codes/?format=json
CSV site_root/phenotypes/PH947/version/2125/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH947', '2125', api_client=client)

Version History

Version
ID
Name Owner Publish date
2125 CCU000 Obesity ieuan.scanlon 2022-05-17 currently shown
1973 CCU000 Obesity ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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