Phenotype Library | phenotype: CCU002_01 Chronic obstructive pulmonary disease (COPD)

CCU002_01 Chronic obstructive pulmonary disease (COPD)

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

PH951

Version ID

2129

Type

Disease or Syndrome

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Covid-19 Second Generation Surveillance System , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , COVID-19 Test Results (PATD) , Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP) , Patient Episode Dataset for Wales (PEDW) , Secondary Uses Services Payment By Results

Valid event data range

01/01/1997 - 07/12/2020

Sex

♀ Female ♂ Male

Agreement Date

2021-11-24

Coding system

Read codes v2 ICD10 codes SNOMED CT codes

Collections

BHF Data Science Centre Phenotype Library

Definition

Publications

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

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C2746/7267 CCU002_01 Chronic obstructive pulmonary disease (COPD) - Phenotypes - England hospitalization EHR: COPD diagnosis - ICD10 codes

Rows: 5

Code	Description	terminology	code_type
J40	Bronchitis not specified as acute or chronic	ICD10	1
J41	Simple and mucopurulent chronic bronchitis	ICD10	1
J42	Unspecified chronic bronchitis	ICD10	1
J43	Emphysema	ICD10	1
J44	Other chronic obstructive pulmonary disease	ICD10	1

C2747/7268 CCU002_01 Chronic obstructive pulmonary disease (COPD) - Phenotypes - England primary care EHR: COPD diagnosis - SNOMED CT codes

Rows: 41

Code	Description	terminology	code_type
10692761000119107	Asthma-chronic obstructive pulmonary disease overlap syndrome (disorder)	SNOMEDCT	1
135836000	End stage chronic obstructive airways disease (disorder)	SNOMEDCT	1
13645005	Chronic obstructive lung disease (disorder)	SNOMEDCT	1
16003001	Giant bullous emphysema (disorder)	SNOMEDCT	1
185086009	Chronic obstructive bronchitis (disorder)	SNOMEDCT	1
195949008	Chronic asthmatic bronchitis (disorder)	SNOMEDCT	1
195953005	Mixed simple and mucopurulent chronic bronchitis (disorder)	SNOMEDCT	1
195957006	Chronic bullous emphysema (disorder)	SNOMEDCT	1
195958001	Segmental bullous emphysema (disorder)	SNOMEDCT	1
195959009	Zonal bullous emphysema (disorder)	SNOMEDCT	1
195963002	Acute vesicular emphysema (disorder)	SNOMEDCT	1
196026004	Chronic emphysema caused by chemical fumes (disorder)	SNOMEDCT	1
196027008	Toxic bronchiolitis obliterans (disorder)	SNOMEDCT	1
233672007	Byssinosis grade 3 (disorder)	SNOMEDCT	1
233673002	Drug-induced bronchiolitis obliterans (disorder)	SNOMEDCT	1
233674008	Pulmonary emphysema in alpha-1 primary immunodeficiency deficiency (disorder)	SNOMEDCT	1
233675009	Toxic emphysema (disorder)	SNOMEDCT	1
233677001	Scar emphysema (disorder)	SNOMEDCT	1
266355005	Bullous emphysema with collapse (disorder)	SNOMEDCT	1
266356006	Atrophic (senile) emphysema (disorder)	SNOMEDCT	1
293991000000106	Very severe chronic obstructive pulmonary disease (disorder)	SNOMEDCT	1
313296004	Mild chronic obstructive pulmonary disease (disorder)	SNOMEDCT	1
313297008	Moderate chronic obstructive pulmonary disease (disorder)	SNOMEDCT	1
313299006	Severe chronic obstructive pulmonary disease (disorder)	SNOMEDCT	1
32544004	Chronic obliterative bronchiolitis caused by inhalation of chemical fumes AND/OR vapors (disorder)	SNOMEDCT	1
360470001	Chronic mucus hypersecretion (disorder)	SNOMEDCT	1
40100001	Obliterative bronchiolitis (disorder)	SNOMEDCT	1
45145000	Unilateral emphysema (situation)	SNOMEDCT	1
49691004	Occupational bronchitis (disorder)	SNOMEDCT	1
4981000	Panacinar emphysema (disorder)	SNOMEDCT	1
52571006	Chronic tracheobronchitis (disorder)	SNOMEDCT	1
61937009	Simple chronic bronchitis (disorder)	SNOMEDCT	1
63480004	Chronic bronchitis (disorder)	SNOMEDCT	1
66987001	Congenital lobar emphysema (disorder)	SNOMEDCT	1
68328006	Centriacinar emphysema (disorder)	SNOMEDCT	1
74417001	Mucopurulent chronic bronchitis (disorder)	SNOMEDCT	1
77690003	Interstitial emphysema of lung (disorder)	SNOMEDCT	1
84409004	Fetid chronic bronchitis (disorder)	SNOMEDCT	1
866901000000103	Eosinophilic bronchitis (disorder)	SNOMEDCT	1
87433001	Pulmonary emphysema (disorder)	SNOMEDCT	1
89549007	Catarrhal bronchitis (disorder)	SNOMEDCT	1

C2748/7269 CCU002_01 Chronic obstructive pulmonary disease (COPD) - Phenotypes - Wales primary care EHR: COPD diagnosis - Read codes v2

Rows: 50

Code	Description	Category	Phenotype
14B3.	History of chronic obstructive pulmonary disease	History of COPD	COPD
H3...	Chronic obstructive pulmonary disease	Diagnosis of COPD	COPD
H31..	Chronic bronchitis	Diagnosis of COPD	COPD
H310.	Simple chronic bronchitis	Diagnosis of COPD	COPD
H3100	Chronic catarrhal bronchitis	Diagnosis of COPD	COPD
H310z	Simple chronic bronchitis NOS	Diagnosis of COPD	COPD
H311.	Mucopurulent chronic bronchitis	Diagnosis of COPD	COPD
H3110	Purulent chronic bronchitis	Diagnosis of COPD	COPD
H3111	Fetid chronic bronchitis	Diagnosis of COPD	COPD
H311z	Mucopurulent chronic bronchitis NOS	Diagnosis of COPD	COPD
H312.	Obstructive chronic bronchitis	Diagnosis of COPD	COPD
H3120	Chronic asthmatic bronchitis	Diagnosis of COPD	COPD
H3121	Emphysematous bronchitis	Diagnosis of COPD	COPD
H3122	Acute exacerbation of chronic obstructive airways disease	Diagnosis of COPD	COPD
H3123	Bronchiolitis obliterans	Diagnosis of COPD	COPD
H312z	Obstructive chronic bronchitis NOS	Diagnosis of COPD	COPD
H313.	Mixed simple and mucopurulent chronic bronchitis	Diagnosis of COPD	COPD
H31y.	Other chronic bronchitis	Diagnosis of COPD	COPD
H31y1	Chronic tracheobronchitis	Diagnosis of COPD	COPD
H31yz	Other chronic bronchitis NOS	Diagnosis of COPD	COPD
H31z.	Chronic bronchitis NOS	Diagnosis of COPD	COPD
H32..	Emphysema	Diagnosis of COPD	COPD
H320.	Chronic bullous emphysema	Diagnosis of COPD	COPD
H3200	Segmental bullous emphysema	Diagnosis of COPD	COPD
H3201	Zonal bullous emphysema	Diagnosis of COPD	COPD
H3202	Giant bullous emphysema	Diagnosis of COPD	COPD
H3203	Bullous emphysema with collapse	Diagnosis of COPD	COPD
H320z	Chronic bullous emphysema NOS	Diagnosis of COPD	COPD
H321.	Panlobular emphysema	Diagnosis of COPD	COPD
H322.	Centrilobular emphysema	Diagnosis of COPD	COPD
H32y.	Other emphysema	Diagnosis of COPD	COPD
H32y0	Acute vesicular emphysema	Diagnosis of COPD	COPD
H32y1	Atrophic (senile) emphysema	Diagnosis of COPD	COPD
H32y2	MacLeod's unilateral emphysema	Diagnosis of COPD	COPD
H32yz	Other emphysema NOS	Diagnosis of COPD	COPD
H32z.	Emphysema NOS	Diagnosis of COPD	COPD
H36..	Mild chronic obstructive pulmonary disease	Diagnosis of COPD	COPD
H37..	Moderate chronic obstructive pulmonary disease	Diagnosis of COPD	COPD
H38..	Severe chronic obstructive pulmonary disease	Diagnosis of COPD	COPD
H39..	Very severe chronic obstructive pulmonary disease	Diagnosis of COPD	COPD
H3A..	End stage chronic obstructive airways disease	Diagnosis of COPD	COPD
H3y..	Other specified chronic obstructive airways disease	Diagnosis of COPD	COPD
H3y0.	Chronic obstruct pulmonary dis with acute lower resp infectn	Diagnosis of COPD	COPD
H3y1.	Chron obstruct pulmonary dis wth acute exacerbation, unspec	Diagnosis of COPD	COPD
H3z..	Chronic obstructive airways disease NOS	Diagnosis of COPD	COPD
H4640	Chronic emphysema due to chemical fumes	Diagnosis of COPD	COPD
H4641	Obliterative bronchiolitis due to chemical fumes	Diagnosis of COPD	COPD
H5832	Eosinophilic bronchitis	Diagnosis of COPD	COPD
Hyu30	[X]Other emphysema	Diagnosis of COPD	COPD
Hyu31	[X]Other specified chronic obstructive pulmonary disease	Diagnosis of COPD	COPD

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH951/version/2129/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH951/version/2129/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH951', '2129', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH951/version/2129/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH951/version/2129/export/codes/?format=json
CSV	site_root/phenotypes/PH951/version/2129/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH951', '2129', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2129	CCU002_01 Chronic obstructive pulmonary disease (COPD)	ieuan.scanlon	2022-05-17	currently shown
1981	CCU002_01 Chronic obstructive pulmonary disease (COPD)	ieuan.scanlon	2022-05-09