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CCU002_01 Chronic obstructive pulmonary disease (COPD)

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

Type
Disease or Syndrome
ID
PH951
Version ID
2129
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Covid-19 Second Generation Surveillance System , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results , COVID-19 Test Results (PATD) , Patient Episode Dataset for Wales (PEDW) , Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP)
Valid event data range
01/01/1997 - 07/12/2020
Sex
Female, Male
Agreement Date
2021-11-24
Coding system
Read codes v2 ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Publications

  • Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

Rows: 5
Code Description terminology code_type
J40 Bronchitis not specified as acute or chronic ICD10 1
J41 Simple and mucopurulent chronic bronchitis ICD10 1
J42 Unspecified chronic bronchitis ICD10 1
J43 Emphysema ICD10 1
J44 Other chronic obstructive pulmonary disease ICD10 1
Rows: 41
Code Description terminology code_type
10692761000119107 Asthma-chronic obstructive pulmonary disease overlap syndrome (disorder) SNOMEDCT 1
135836000 End stage chronic obstructive airways disease (disorder) SNOMEDCT 1
13645005 Chronic obstructive lung disease (disorder) SNOMEDCT 1
16003001 Giant bullous emphysema (disorder) SNOMEDCT 1
185086009 Chronic obstructive bronchitis (disorder) SNOMEDCT 1
195949008 Chronic asthmatic bronchitis (disorder) SNOMEDCT 1
195953005 Mixed simple and mucopurulent chronic bronchitis (disorder) SNOMEDCT 1
195957006 Chronic bullous emphysema (disorder) SNOMEDCT 1
195958001 Segmental bullous emphysema (disorder) SNOMEDCT 1
195959009 Zonal bullous emphysema (disorder) SNOMEDCT 1
195963002 Acute vesicular emphysema (disorder) SNOMEDCT 1
196026004 Chronic emphysema caused by chemical fumes (disorder) SNOMEDCT 1
196027008 Toxic bronchiolitis obliterans (disorder) SNOMEDCT 1
233672007 Byssinosis grade 3 (disorder) SNOMEDCT 1
233673002 Drug-induced bronchiolitis obliterans (disorder) SNOMEDCT 1
233674008 Pulmonary emphysema in alpha-1 primary immunodeficiency deficiency (disorder) SNOMEDCT 1
233675009 Toxic emphysema (disorder) SNOMEDCT 1
233677001 Scar emphysema (disorder) SNOMEDCT 1
266355005 Bullous emphysema with collapse (disorder) SNOMEDCT 1
266356006 Atrophic (senile) emphysema (disorder) SNOMEDCT 1
293991000000106 Very severe chronic obstructive pulmonary disease (disorder) SNOMEDCT 1
313296004 Mild chronic obstructive pulmonary disease (disorder) SNOMEDCT 1
313297008 Moderate chronic obstructive pulmonary disease (disorder) SNOMEDCT 1
313299006 Severe chronic obstructive pulmonary disease (disorder) SNOMEDCT 1
32544004 Chronic obliterative bronchiolitis caused by inhalation of chemical fumes AND/OR vapors (disorder) SNOMEDCT 1
360470001 Chronic mucus hypersecretion (disorder) SNOMEDCT 1
40100001 Obliterative bronchiolitis (disorder) SNOMEDCT 1
45145000 Unilateral emphysema (situation) SNOMEDCT 1
49691004 Occupational bronchitis (disorder) SNOMEDCT 1
4981000 Panacinar emphysema (disorder) SNOMEDCT 1
52571006 Chronic tracheobronchitis (disorder) SNOMEDCT 1
61937009 Simple chronic bronchitis (disorder) SNOMEDCT 1
63480004 Chronic bronchitis (disorder) SNOMEDCT 1
66987001 Congenital lobar emphysema (disorder) SNOMEDCT 1
68328006 Centriacinar emphysema (disorder) SNOMEDCT 1
74417001 Mucopurulent chronic bronchitis (disorder) SNOMEDCT 1
77690003 Interstitial emphysema of lung (disorder) SNOMEDCT 1
84409004 Fetid chronic bronchitis (disorder) SNOMEDCT 1
866901000000103 Eosinophilic bronchitis (disorder) SNOMEDCT 1
87433001 Pulmonary emphysema (disorder) SNOMEDCT 1
89549007 Catarrhal bronchitis (disorder) SNOMEDCT 1
Rows: 50
Code Description Category Phenotype
14B3. History of chronic obstructive pulmonary disease History of COPD COPD
H3... Chronic obstructive pulmonary disease Diagnosis of COPD COPD
H31.. Chronic bronchitis Diagnosis of COPD COPD
H310. Simple chronic bronchitis Diagnosis of COPD COPD
H3100 Chronic catarrhal bronchitis Diagnosis of COPD COPD
H310z Simple chronic bronchitis NOS Diagnosis of COPD COPD
H311. Mucopurulent chronic bronchitis Diagnosis of COPD COPD
H3110 Purulent chronic bronchitis Diagnosis of COPD COPD
H3111 Fetid chronic bronchitis Diagnosis of COPD COPD
H311z Mucopurulent chronic bronchitis NOS Diagnosis of COPD COPD
H312. Obstructive chronic bronchitis Diagnosis of COPD COPD
H3120 Chronic asthmatic bronchitis Diagnosis of COPD COPD
H3121 Emphysematous bronchitis Diagnosis of COPD COPD
H3122 Acute exacerbation of chronic obstructive airways disease Diagnosis of COPD COPD
H3123 Bronchiolitis obliterans Diagnosis of COPD COPD
H312z Obstructive chronic bronchitis NOS Diagnosis of COPD COPD
H313. Mixed simple and mucopurulent chronic bronchitis Diagnosis of COPD COPD
H31y. Other chronic bronchitis Diagnosis of COPD COPD
H31y1 Chronic tracheobronchitis Diagnosis of COPD COPD
H31yz Other chronic bronchitis NOS Diagnosis of COPD COPD
H31z. Chronic bronchitis NOS Diagnosis of COPD COPD
H32.. Emphysema Diagnosis of COPD COPD
H320. Chronic bullous emphysema Diagnosis of COPD COPD
H3200 Segmental bullous emphysema Diagnosis of COPD COPD
H3201 Zonal bullous emphysema Diagnosis of COPD COPD
H3202 Giant bullous emphysema Diagnosis of COPD COPD
H3203 Bullous emphysema with collapse Diagnosis of COPD COPD
H320z Chronic bullous emphysema NOS Diagnosis of COPD COPD
H321. Panlobular emphysema Diagnosis of COPD COPD
H322. Centrilobular emphysema Diagnosis of COPD COPD
H32y. Other emphysema Diagnosis of COPD COPD
H32y0 Acute vesicular emphysema Diagnosis of COPD COPD
H32y1 Atrophic (senile) emphysema Diagnosis of COPD COPD
H32y2 MacLeod's unilateral emphysema Diagnosis of COPD COPD
H32yz Other emphysema NOS Diagnosis of COPD COPD
H32z. Emphysema NOS Diagnosis of COPD COPD
H36.. Mild chronic obstructive pulmonary disease Diagnosis of COPD COPD
H37.. Moderate chronic obstructive pulmonary disease Diagnosis of COPD COPD
H38.. Severe chronic obstructive pulmonary disease Diagnosis of COPD COPD
H39.. Very severe chronic obstructive pulmonary disease Diagnosis of COPD COPD
H3A.. End stage chronic obstructive airways disease Diagnosis of COPD COPD
H3y.. Other specified chronic obstructive airways disease Diagnosis of COPD COPD
H3y0. Chronic obstruct pulmonary dis with acute lower resp infectn Diagnosis of COPD COPD
H3y1. Chron obstruct pulmonary dis wth acute exacerbation, unspec Diagnosis of COPD COPD
H3z.. Chronic obstructive airways disease NOS Diagnosis of COPD COPD
H4640 Chronic emphysema due to chemical fumes Diagnosis of COPD COPD
H4641 Obliterative bronchiolitis due to chemical fumes Diagnosis of COPD COPD
H5832 Eosinophilic bronchitis Diagnosis of COPD COPD
Hyu30 [X]Other emphysema Diagnosis of COPD COPD
Hyu31 [X]Other specified chronic obstructive pulmonary disease Diagnosis of COPD COPD

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH951/version/2129/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH951/version/2129/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH951', '2129', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH951/version/2129/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH951/version/2129/export/codes/?format=json
CSV site_root/phenotypes/PH951/version/2129/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH951', '2129', api_client=client)

Version History

Version
ID
Name Owner Publish date
2129 CCU002_01 Chronic obstructive pulmonary disease (COPD) ieuan.scanlon 2022-05-17 currently shown
1981 CCU002_01 Chronic obstructive pulmonary disease (COPD) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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