CCU002_01 COVID19 infection

Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas

PH952 / 2130 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    23/01/2020 - 31/05/2021
    Coding System
    ICD10 codesOPCS4 codesSNOMED CT codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19)
    Hospital Episode Statistics Admitted Patient Care
    Civil Registration - Deaths
    Covid-19 Second Generation Surveillance System
    Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT
    Secondary Uses Services Payment By Results
    COVID-19 SARI-Watch (formerly CHESS)
    Collections
    BHF Data Science CentrePhenotype Library
    Tags
    No data
    Ontology
    No data

  2. Definition

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    Related publications

    • Understanding COVID-19 trajectories from a nationwide linked electronic health record cohort of 56 million people: phenotypes, severity, waves & vaccination Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas m

    Citation Example

    Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas. PH952 / 2130 - CCU002_01 COVID19 infection. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH952/version/2130/detail/. [Accessed 15 February 2025]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH952/version/2130/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH952',
     version_id=2130
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH952',
     version_id=2130
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH952/version/2130/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH952',
     version_id=2130
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH952',
     version_id=2130
    )

  7. Version History

    Version IDNameOwnerPublish date
    CCU002_01 COVID19 infection ieuan.scanlon2022-05-17 21:16
    1983 CCU002_01 COVID19 infection ieuan.scanlon2022-05-09 07:56