CCU002_01 COVID19 infection
Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas
PH952 / 2130 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range23/01/2020 - 31/05/2021Coding SystemICD10 codesOPCS4 codesSNOMED CT codesData SourcesGPES Data for Pandemic Planning and Research (COVID-19), Hospital Episode Statistics Admitted Patient Care, Covid-19 Second Generation Surveillance System, Civil Registration - Deaths, Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT, Secondary Uses Services Payment By Results, COVID-19 SARI-Watch (formerly CHESS)CollectionsBHF Data Science CentrePhenotype LibraryTagsNo dataDefinition
Implementation
Implementation
Clinical Code List
PUBLISHED - 41 Codes
PUBLISHED - 2 Codes
PUBLISHED - 2 Codes
Publication
Understanding COVID-19 trajectories from a nationwide linked electronic health record cohort of 56 million people: phenotypes, severity, waves & vaccination Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas m
Citation Example
Johan H Thygesen, Christopher Tomlinson, Sam Hollings, Mehrdad Mizani, Alex Handy, Ashley Akbari, Amitava Banerjee, Jennifer Cooper, Alvina Lai, Ken Li, Bilal Mateen, Naveed Sattar, Reecha Sofat, Ana Torralbo, Honghan Wu, Angela Wood, Jonathan A C Sterne, Christina Pagel, William Whiteley, Cathie Sudlow, Harry Hemingway, Spiros Denaxas. PH952 / 2130 - CCU002_01 COVID19 infection. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH952/version/2130/detail/. [Accessed 07 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH952/version/2130/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH952',
version_id=2130
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH952',
version_id=2130
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH952/version/2130/export/codes/?format=json CSV site_root/phenotypes/PH952/version/2130/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH952',
version_id=2130
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH952',
version_id=2130
)Version History