CCU002_01 Cancer
Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne
PH960 / 2138 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromePhenotype UUIDjTyUSQ6GmyGeGSuoytx7VkSexBothValid Event Date Range01/01/1997 - 07/12/2020Coding SystemICD10 codesRead codes v2SNOMED CT codesData SourcesGPES Data for Pandemic Planning and Research (COVID-19), Hospital Episode Statistics Admitted Patient Care, Covid-19 Second Generation Surveillance System, Civil Registration - Deaths, Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT, COVID-19 Test Results (PATD), Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP), Patient Episode Dataset for Wales (PEDW), Secondary Uses Services Payment By ResultsCollectionsBHF Data Science CentrePhenotype LibraryTagsNo dataDefinition
Implementation
Implementation
Clinical Code List
PUBLISHED - 70 Codes
PUBLISHED - 1906 Codes
PUBLISHED - 12 Codes
PUBLISHED - 1667 Codes
Publication
Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th
Citation Example
Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne. PH960 / 2138 - CCU002_01 Cancer. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH960/version/2138/detail/. [Accessed 07 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH960/version/2138/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH960',
version_id=2138
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH960',
version_id=2138
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH960/version/2138/export/codes/?format=json CSV site_root/phenotypes/PH960/version/2138/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH960',
version_id=2138
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH960',
version_id=2138
)Version History