Phenotype Library | phenotype: CCU002

CCU002_01 Cardiomyopathy

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

PH961

Version ID

2139

Type

Disease or Syndrome

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Covid-19 Second Generation Surveillance System , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , COVID-19 Test Results (PATD) , Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP) , Patient Episode Dataset for Wales (PEDW) , Secondary Uses Services Payment By Results

Valid event data range

01/01/1997 - 07/12/2020

Sex

♀ Female ♂ Male

Agreement Date

2021-11-24

Coding system

Read codes v2 ICD10 codes SNOMED CT codes

Collections

BHF Data Science Centre Phenotype Library

Definition

Publications

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

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C2769/7290 CCU002_01 Cardiomyopathy - Phenotypes - England hospitalization EHR: Cardiomyopathy - ICD10 codes

Rows: 9

Code	Description	terminology	code_type
I25.5	Ischaemic cardiomyopathy	ICD10	1
I42.0	Dilated cardiomyopathy	ICD10	1
I42.3	Endomyocardial (eosinophilic) disease	ICD10	1
I42.5	Other restrictive cardiomyopathy	ICD10	1
I42.7	Cardiomyopathy due to drugs and other external agents	ICD10	1
I42.8	Other cardiomyopathies	ICD10	1
I42.9	Cardiomyopathy, unspecified	ICD10	1
I43	Cardiomyopathy in diseases classified elsewhere	ICD10	1
O90.3	Cardiomyopathy in the puerperium	ICD10	1

C2770/7291 CCU002_01 Cardiomyopathy - Phenotypes - England primary care EHR: Cardiomyopathy - SNOMED CT codes

Rows: 3

Code	Description	terminology	code_type
1321241000000105	Cardiomyopathy caused by severe acute respiratory syndrome coronavirus 2 (disorder)	SNOMEDCT	1
240072005	Benign scapuloperoneal muscular dystrophy with cardiomyopathy (disorder)	SNOMEDCT	1
240077004	Severe scapuloperoneal muscular dystrophy with cardiomyopathy (disorder)	SNOMEDCT	1

C2771/7292 CCU002_01 Cardiomyopathy - Phenotypes - Wales primary care EHR: Cardiomyopathy - Read codes v2

Rows: 31

Code	Description	Category	Phenotype
C3733	Familial cardiac amyloid	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
C373G	Senile cardiac amyloidosis	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
F391B	Cardiomyopathy in Duchenne muscular dystrophy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G343.	Ischaemic cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G55..	Cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G550.	Endomyocardial fibrosis	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G552.	Obscure African cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G554.	Other primary cardiomyopathies	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5541	Constrictive cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5542	Familial cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5545	Takotsubo cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G554z	Other primary cardiomyopathy NOS	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G557.	Nutritional and metabolic cardiomyopathies	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5570	Amyloid heart disease	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5571	Beriberi heart disease	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5575	Thyrotoxic heart disease	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G557z	Nutritional and metabolic cardiomyopathy NOS	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G558.	Cardiomyopathy in disease EC	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5580	Cardiomyopathy in Friedreich's ataxia	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5581	Cardiomyopathy in myotonic dystrophy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5582	Dystrophic cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G5584	Amyloid cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G558z	Cardiomyopathy in diseases EC, NOS	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G559.	Arrhythmogenic right ventricular cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G55A.	Tachycardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G55y.	Secondary cardiomyopathy NOS	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G55y0	Cardiomyopathy due to drugs and other external agents	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
G55z.	Cardiomyopathy NOS	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
Gyu5N	[X]Other restrictive cardiomyopathy	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
Gyu5P	[X]Other cardiomyopathies	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY
Gyu5R	[X]Cardiomyopathy in metabolic diseases CE	Diagnosis of Other Cardiomyopathy	CARDIOMYOPATHY

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH961/version/2139/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH961/version/2139/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH961', '2139', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH961/version/2139/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH961/version/2139/export/codes/?format=json
CSV	site_root/phenotypes/PH961/version/2139/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH961', '2139', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2139	CCU002_01 Cardiomyopathy	ieuan.scanlon	2022-05-17	currently shown
2001	CCU002_01 Cardiomyopathy	ieuan.scanlon	2022-05-09