Phenotype Library | phenotype: Anal fissure

Anal fissure

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH97

Version ID

194

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes OPCS4 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Anal fissure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Anal fissure' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Anal fissure' or history of diagnosis during a hospitalization OR Secondary care (OPCS4)
ALL procedures for 'Anal fissure' during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/287

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C954/3047 Anal fissure - Primary care - Read codes v2

Rows: 8

Code	Description	Disease	Medcode	Category
7739300.0	Excision of anal fissure	Anal fissure	1089.0	Procedure for Anal fissure
J53..00	Anal fissure and fistula	Anal fissure	1979.0	Diagnosis of Anal fissure
J530.00	Anal fissure	Anal fissure	928.0	Diagnosis of Anal fissure
J530.11	Tear of anus - non-traumatic	Anal fissure	12665.0	Diagnosis of Anal fissure
J530000	Acute anal fissure	Anal fissure	10905.0	Diagnosis of Anal fissure
J530100	Chronic anal fissure	Anal fissure	18337.0	Diagnosis of Anal fissure
J53z.00	Anal fissure and fistula NOS	Anal fissure	15210.0	Diagnosis of Anal fissure
J544.00	Ano-rectal fissure abscess	Anal fissure	62790.0	Diagnosis of Anal fissure

C955/3049 Anal fissure - Primary care - Med codes

Rows: 8

Code	Description	Disease	ReadcodeDescr	Readcode
1089.0	Procedure for Anal fissure	Anal fissure	Excision of anal fissure	7739300.0
10905.0	Diagnosis of Anal fissure	Anal fissure	Acute anal fissure	J530000
12665.0	Diagnosis of Anal fissure	Anal fissure	Tear of anus - non-traumatic	J530.11
15210.0	Diagnosis of Anal fissure	Anal fissure	Anal fissure and fistula NOS	J53z.00
18337.0	Diagnosis of Anal fissure	Anal fissure	Chronic anal fissure	J530100
1979.0	Diagnosis of Anal fissure	Anal fissure	Anal fissure and fistula	J53..00
62790.0	Diagnosis of Anal fissure	Anal fissure	Ano-rectal fissure abscess	J544.00
928.0	Diagnosis of Anal fissure	Anal fissure	Anal fissure	J530.00

C956/3051 Anal fissure - Secondary care - Diagnoses - ICD10 codes

Rows: 3

Code	Description	Disease	Category
K60.0	Acute anal fissure	Anal fissure	Diagnosis of Anal fissure
K60.1	Chronic anal fissure	Anal fissure	Diagnosis of Anal fissure
K60.2	Anal fissure, unspecified	Anal fissure	Diagnosis of Anal fissure

C957/3053 Anal fissure - Secondary care - Procedures - OPCS4 codes

Rows: 1

Code	Description	Disease	Category
H56.4	Excision of anal fissure	Anal fissure	Procedure for Anal fissure

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH97/version/194/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH97/version/194/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH97', '194', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH97/version/194/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH97/version/194/export/codes/?format=json
CSV	site_root/phenotypes/PH97/version/194/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH97', '194', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
194	Anal fissure	ieuan.scanlon	2021-10-06	currently shown