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CCU002_01 Obesity

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

Type
Disease or Syndrome
ID
PH976
Version ID
2154
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Covid-19 Second Generation Surveillance System , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results , COVID-19 Test Results (PATD) , Patient Episode Dataset for Wales (PEDW) , Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP)
Valid event data range
01/01/1997 - 07/12/2020
Sex
Female, Male
Agreement Date
2021-11-24
Coding system
Read codes v2 ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Publications

  • Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

Rows: 7
Code Description terminology code_type
162864005 Body mass index 30+ - obesity (finding) SNOMEDCT 1
408512008 Body mass index 40+ - severely obese (finding) SNOMEDCT 1
914721000000105 Obese class I (body mass index 30.0 - 34.9) (finding) SNOMEDCT 1
914731000000107 Obese class II (body mass index 35.0 - 39.9) (finding) SNOMEDCT 1
914741000000103 Obese class III (body mass index equal to or greater than 40.0) (finding) SNOMEDCT 1
921031000000102 Child body mass index 98.1st-99.6th centile (finding) SNOMEDCT 1
921051000000109 Child body mass index greater than 99.6th centile (finding) SNOMEDCT 1
Rows: 1
Code Description terminology
E66 Diagnosis of obesity ICD10
Rows: 27
Code Description Category Phenotype
222A. O/E - obese Diagnosis of Obesity OBESITY
22A5. O/E - obese Diagnosis of Obesity OBESITY
22K5. Body mass index 30+ - obesity Diagnosis of Obesity OBESITY
22K7. Body mass index 40+ - severely obese Diagnosis of Obesity OBESITY
66C1. Initial obesity assessment Diagnosis of Obesity OBESITY
66C4. Has seen dietician - obesity Diagnosis of Obesity OBESITY
66C5. Treatment of obesity changed Diagnosis of Obesity OBESITY
66C6. Treatment of obesity started Diagnosis of Obesity OBESITY
66CE. Reason for obesity therapy - occupational Diagnosis of Obesity OBESITY
C38.. Obesity and other hyperalimentation Diagnosis of Obesity OBESITY
C380. Obesity Diagnosis of Obesity OBESITY
C3800 Obesity due to excess calories Diagnosis of Obesity OBESITY
C3801 Drug-induced obesity Diagnosis of Obesity OBESITY
C3802 Extreme obesity with alveolar hypoventilation Diagnosis of Obesity OBESITY
C3803 Morbid obesity Diagnosis of Obesity OBESITY
C3804 Central obesity Diagnosis of Obesity OBESITY
C3805 Generalised obesity Diagnosis of Obesity OBESITY
C3806 Adult-onset obesity Diagnosis of Obesity OBESITY
C3807 Lifelong obesity Diagnosis of Obesity OBESITY
C38y. Pickwickian syndrome Diagnosis of Obesity OBESITY
C38y0 Pickwickian syndrome Diagnosis of Obesity OBESITY
C38z. Obesity and other hyperalimentation NOS Diagnosis of Obesity OBESITY
C38z0 Simple obesity NOS Diagnosis of Obesity OBESITY
Cyu7. [X]Obesity and other hyperalimentation Diagnosis of Obesity OBESITY
Cyu70 [X]Other obesity Diagnosis of Obesity OBESITY
ZC2CM Dietary advice for obesity Diagnosis of Obesity OBESITY
ZV653 [V]Dietary counselling in obesity Diagnosis of Obesity OBESITY
Rows: 1
Code Description Category Phenotype
22K.. Body Mass Index Measurement BMI

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH976/version/2154/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH976/version/2154/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH976', '2154', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH976/version/2154/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH976/version/2154/export/codes/?format=json
CSV site_root/phenotypes/PH976/version/2154/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH976', '2154', api_client=client)

Version History

Version
ID
Name Owner Publish date
2154 CCU002_01 Obesity ieuan.scanlon 2022-05-17 currently shown
2031 CCU002_01 Obesity ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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