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CCU002_01 Pulmonary embolismm (PE)

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

Type
Disease or Syndrome
ID
PH978
Version ID
2156
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Covid-19 Second Generation Surveillance System , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results , COVID-19 Test Results (PATD) , Patient Episode Dataset for Wales (PEDW) , Welsh Longitudinal GP Dataset - Welsh Primary Care (WLGP)
Valid event data range
01/01/1997 - 07/12/2020
Sex
Female, Male
Agreement Date
2021-11-24
Coding system
Read codes v2 ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Publications

  • Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

Rows: 2
Code Description terminology code_type
I26.0 Pulmonary embolism ICD10 1
I26.9 Pulmonary embolism ICD10 1
Rows: 2
Code Description terminology code_type
133971000119108 Pulmonary embolism with mention of acute cor pulmonale SNOMEDCT 1
438773007 Pulmonary embolism with mention of acute cor pulmonale SNOMEDCT 1
Rows: 8
Code Description Category Phenotype
14AC. H/O: pulmonary embolus History of Pulmonary embolism PE
7A093 Open embolectomy of pulmonary artery Procedure for Pulmonary embolism PE
7A0A1 Percutaneous transluminal embolectomy of pulmonary artery Procedure for Pulmonary embolism PE
7A0B0 Pulmonary thromboendarterectomy Procedure for Pulmonary embolism PE
G401. Pulmonary embolism Diagnosis of Pulmonary embolism PE
G4010 Post operative pulmonary embolus Diagnosis of Pulmonary embolism PE
G4011 Recurrent pulmonary embolism Diagnosis of Pulmonary embolism PE
ZV129 [V] Personal history of pulmonary embolism History of Pulmonary embolism PE

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH978/version/2156/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH978/version/2156/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH978', '2156', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH978/version/2156/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH978/version/2156/export/codes/?format=json
CSV site_root/phenotypes/PH978/version/2156/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH978', '2156', api_client=client)

Version History

Version
ID
Name Owner Publish date
2156 CCU002_01 Pulmonary embolismm (PE) ieuan.scanlon 2022-05-17 currently shown
2035 CCU002_01 Pulmonary embolismm (PE) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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