Phenotypes > Angiodysplasia of colon

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Angiodysplasia of colon

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH98
Version ID
196
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Angiodysplasia of colon' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Angiodysplasia of colon' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Angiodysplasia of colon' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/290

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 1
Code Description Disease Medcode Category
J577000 Angiodysplasia of colon Angiodysplasia of colon 6504.0 Diagnosis of Angiodysplasia of colon
Rows: 1
Code Description Disease ReadcodeDescr Readcode
6504.0 Diagnosis of Angiodysplasia of colon Angiodysplasia of colon Angiodysplasia of colon J577000
Rows: 1
Code Description Disease Category
K55.2 Angiodysplasia of colon Angiodysplasia of colon Diagnosis of Angiodysplasia of colon

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH98/version/196/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH98/version/196/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH98', '196', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH98/version/196/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH98/version/196/export/codes/?format=json
CSV site_root/phenotypes/PH98/version/196/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH98', '196', api_client=client)

Version History

Version
ID		 Name Owner Publish date
196 Angiodysplasia of colon ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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