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CCU002_01 Smoking status

Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne

ID
PH982
Version ID
2160
Type
Disease or Syndrome
Valid event data range
01/01/1997 - 07/12/2020
Sex
♀  Female ♂  Male
Agreement Date
2021-11-24
Coding system
Read codes v2 SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Publications

  • Rochelle Knight, Venexia Walker, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Rachel Denholm, Ashley Akbari, Hoda Abbasizanjani, Fatemeh Torabi, Efosa Omigie, Sam Hollings, Teri-Louise North, Renin Toms, Emanuele Di Angelantonio, Spiros Denaxas, Johan H Thygesen, Christopher Tomlinson, Ben Bray, Craig J Smith, Mark Barber, George Davey Smith, Nishi Chaturvedi, Cathie Sudlow, William N Whiteley, Angela Wood, Jonathan A C Sterne, for the CVD-COVID-UK/COVID-IMPACT consortium and th

Clinical Code List

Rows: 29
Code Description terminology
1092031000000100 Ex-smoker amount unknown (finding) SNOMEDCT
1092041000000100 Ex-very heavy smoker (40+/day) (finding) SNOMEDCT
1092071000000100 Ex-heavy smoker (20-39/day) (finding) SNOMEDCT
1092091000000100 Ex-moderate smoker (10-19/day) (finding) SNOMEDCT
1092111000000100 Ex-light smoker (1-9/day) (finding) SNOMEDCT
1092131000000100 Ex-trivial smoker (<1/day) (finding) SNOMEDCT
160617001 Stopped smoking (finding) SNOMEDCT
160620009 Ex-pipe smoker (finding) SNOMEDCT
160621008 Ex-cigar smoker (finding) SNOMEDCT
160625004 Date ceased smoking (observable entity) SNOMEDCT
228486009 Time since stopped smoking (observable entity) SNOMEDCT
230058003 Pipe tobacco consumption (observable entity) SNOMEDCT
230065006 Chain smoker (finding) SNOMEDCT
266918002 Tobacco smoking consumption (observable entity) SNOMEDCT
266921000 Ex-trivial cigarette smoker (<1/day) (finding) SNOMEDCT
266922007 Ex-light cigarette smoker (1-9/day) (finding) SNOMEDCT
266923002 Ex-moderate cigarette smoker (10-19/day) (finding) SNOMEDCT
266924008 Ex-heavy cigarette smoker (20-39/day) (finding) SNOMEDCT
266925009 Ex-very heavy cigarette smoker (40+/day) (finding) SNOMEDCT
266928006 Ex-cigarette smoker amount unknown (finding) SNOMEDCT
281018007 Ex-cigarette smoker (finding) SNOMEDCT
360890004 Intolerant ex-smoker (finding) SNOMEDCT
360900008 Aggressive ex-smoker (finding) SNOMEDCT
48031000119106 Ex-smoker for more than 1 year (finding) SNOMEDCT
492191000000103 Ex roll-up cigarette smoker (finding) SNOMEDCT
53896009 Tolerant ex-smoker (finding) SNOMEDCT
735112005 Date ceased using moist tobacco (observable entity) SNOMEDCT
735128000 Ex-smoker for less than 1 year (finding) SNOMEDCT
8517006 Ex-smoker (finding) SNOMEDCT
Rows: 41
Code Description terminology
134406006 Smoking reduced (finding) SNOMEDCT
160603005 Light cigarette smoker (1-9 cigs/day) (finding) SNOMEDCT
160604004 Moderate cigarette smoker (10-19 cigs/day) (finding) SNOMEDCT
160605003 Heavy cigarette smoker (20-39 cigs/day) (finding) SNOMEDCT
160606002 Very heavy cigarette smoker (40+ cigs/day) (finding) SNOMEDCT
160612007 Keeps trying to stop smoking (finding) SNOMEDCT
160613002 Admitted tobacco consumption possibly untrue (finding) SNOMEDCT
160616005 Trying to give up smoking (finding) SNOMEDCT
160619003 Rolls own cigarettes (finding) SNOMEDCT
160625004 Date ceased smoking (observable entity) SNOMEDCT
203191000000107 Wants to stop smoking (finding) SNOMEDCT
225934006 Smokes in bed (finding) SNOMEDCT
230056004 Cigarette consumption (observable entity) SNOMEDCT
230057008 Cigar consumption (observable entity) SNOMEDCT
230058003 Pipe tobacco consumption (observable entity) SNOMEDCT
230059006 Occasional cigarette smoker (finding) SNOMEDCT
230060001 Light cigarette smoker (finding) SNOMEDCT
230062009 Moderate cigarette smoker (finding) SNOMEDCT
230063004 Heavy cigarette smoker (finding) SNOMEDCT
230064005 Very heavy cigarette smoker (finding) SNOMEDCT
230065006 Chain smoker (finding) SNOMEDCT
266918002 Tobacco smoking consumption (observable entity) SNOMEDCT
266920004 Trivial cigarette smoker (less than one cigarette/day) (finding) SNOMEDCT
266929003 Smoking started (finding) SNOMEDCT
308438006 Smoking restarted (finding) SNOMEDCT
394871007 Thinking about stopping smoking (finding) SNOMEDCT
394872000 Ready to stop smoking (finding) SNOMEDCT
394873005 Not interested in stopping smoking (finding) SNOMEDCT
401159003 Reason for restarting smoking (observable entity) SNOMEDCT
401201003 Cigarette pack-years (observable entity) SNOMEDCT
413173009 Minutes from waking to first tobacco consumption (observable entity) SNOMEDCT
428041000124106 Occasional tobacco smoker (finding) SNOMEDCT
446172000 Failed attempt to stop smoking (finding) SNOMEDCT
449868002 Smokes tobacco daily (finding) SNOMEDCT
56578002 Moderate smoker (20 or less per day) (finding) SNOMEDCT
56771006 Heavy smoker (over 20 per day) (finding) SNOMEDCT
59978006 Cigar smoker (finding) SNOMEDCT
65568007 Cigarette smoker (finding) SNOMEDCT
77176002 Smoker (finding) SNOMEDCT
82302008 Pipe smoker (finding) SNOMEDCT
836001000000109 Waterpipe tobacco consumption (observable entity) SNOMEDCT
Rows: 101
Code Description Category Phenotype
1371 Non-smoker (& [never smoked tobacco]) N SMOKING
1372 (Trivial smoker - < 1 cig/day) or (occasional smoker) S SMOKING
1373 Light cigarette smoker (1-9 cigs/day) S SMOKING
1374 Moderate cigarette smoker (10-19 cigs/day) S SMOKING
1375 Heavy cigarette smoker (20-39 cigs/day) S SMOKING
1376 Very heavy cigarette smoker (40+ cigs/day) S SMOKING
1377 Ex-trivial smoker (<1/day) E SMOKING
1378 Ex-light smoker (1-9/day) E SMOKING
1379 Ex-moderate smoker (10-19/day) E SMOKING
137A. Ex-heavy smoker (20-39/day) E SMOKING
137B. Ex-very heavy smoker (40+/day) E SMOKING
137F. Ex-smoker - amount unknown E SMOKING
137H. Pipe smoker S SMOKING
137J. Cigar smoker S SMOKING
137K. Stopped smoking E SMOKING
137L. Current non-smoker N SMOKING
137M. Rolls own cigarettes S SMOKING
137N. Ex-pipe smoker E SMOKING
137O. Ex-cigar smoker E SMOKING
137P. Smoker (& cigarette) S SMOKING
137Q. Smoking: [started] or [restarted] S SMOKING
137R. Smoker S SMOKING
137T. Date ceased smoking E SMOKING
137l. Ex roll-up cigarette smoker E SMOKING
E251. Tobacco dependence S SMOKING
E2510 Tobacco dependence, unspecified S SMOKING
E2511 Tobacco dependence, continuous S SMOKING
E2512 Tobacco dependence, episodic S SMOKING
E251z Tobacco dependence NOS S SMOKING
Eu17. [X]Mental and behavioural disorder due to use of tobacco S SMOKING
Eu170 [X]Mental & behav dis due to use tobacco: acute intoxication S SMOKING
Eu171 [X]Mental and behav dis due to use of tobacco: harmful use S SMOKING
Eu172 [X]Mental and behav dis due to use tobacco: dependence syndr S SMOKING
Eu175 [X]Mental & behav dis due to use tobacco: psychotic disorder S SMOKING
Eu176 [X]Mental and behav dis due to use tobacco: amnesic syndrome S SMOKING
Eu177 [X]Men & beh dis due tobacco: resid & late-onset psychot dis S SMOKING
Eu17y [X]Men & behav dis due to use tobacco: oth men & behav dis S SMOKING
Eu17z [X]Ment & behav dis due use tobacco: unsp ment & behav dis S SMOKING
H3101 Smokers' cough S SMOKING
Ua2Cl Smokes in bed S SMOKING
Ub0oq Non-smoker N SMOKING
Ub0p1 Time since stopped smoking E SMOKING
Ub1na Ex-smoker E SMOKING
Ub1tR Occasional cigarette smoker S SMOKING
Ub1tS Light cigarette smoker S SMOKING
Ub1tT Moderate cigarette smoker S SMOKING
Ub1tU Heavy cigarette smoker S SMOKING
Ub1tV Very heavy cigarette smoker S SMOKING
Ub1tW Chain smoker S SMOKING
X20Qm Smokers keratosis S SMOKING
XE0oh Never smoked tobacco N SMOKING
XE0oi Trivial cigarette smoker (less than one cigarette/day) S SMOKING
XE0oj Ex-trivial cigarette smoker (<1/day) E SMOKING
XE0ok Ex-light cigarette smoker (1-9/day) E SMOKING
XE0ol Ex-moderate cigarette smoker (10-19/day) E SMOKING
XE0om Ex-heavy cigarette smoker (20-39/day) E SMOKING
XE0on Ex-very heavy cigarette smoker (40+/day) E SMOKING
XE0op Ex-cigarette smoker amount unknown E SMOKING
XE0oq Cigarette smoker S SMOKING
XE0or Smoking started S SMOKING
XE1b4 Tobacco dependence (& [dependent smoker]) S SMOKING
Xa1bv Ex-cigarette smoker E SMOKING
XaBSp Smoking restarted S SMOKING
XaIIu Smoking reduced S SMOKING
XaIkW Thinking about stopping smoking S SMOKING
XaIkX Ready to stop smoking S SMOKING
XaIkY Not interested in stopping smoking S SMOKING
XaItg Reason for restarting smoking S SMOKING
XaJX2 Minutes from waking to first tobacco consumption S SMOKING
XaLQh Wants to stop smoking S SMOKING
XaQ8V Ex roll-up cigarette smoker E SMOKING
XaQUB Current smoker annual review S SMOKING
XaQUC Non-smoker annual review N SMOKING
XaQUI Ex-smoker annual review E SMOKING
XaQzw Recently stopped smoking E SMOKING
XaWNE Failed attempt to stop smoking S SMOKING
XaXP6 Stopped smoking during pregnancy E SMOKING
XaXP8 Stopped smoking before pregnancy E SMOKING
XaXP9 Smoker before confirmation of pregnancy E SMOKING
XaXYo Tobacco smoke free home N SMOKING
XagO3 Occasional tobacco smoker S SMOKING
Y0983 Smoking status at 4 weeks - Smoker S SMOKING
Y0984 Smoking status at 4 weeks - Ex-smoker E SMOKING
Y0993 Smoking status between 4 and 52 weeks - Current non-smoker N SMOKING
Y0994 Smoking status between 4 and 52 weeks - Smoker S SMOKING
Y099f Smoking status at 52 weeks - Current non-smoker N SMOKING
Y09a0 Smoking status at 52 weeks - Smoker S SMOKING
Y1152 Smoke free at 6 weeks confirmed by CO reading E SMOKING
Y1153 Smoke free at 12 weeks confirmed by CO reading E SMOKING
Y19d7 Stop Smoking Medication Offered S SMOKING
Y2869 Wants to stop smoking S SMOKING
Y3985 Reduced Smoker S SMOKING
Y6626 Ex cigar smoker E SMOKING
Y6627 Ex pipe smoker E SMOKING
Y6628 Ex smoker E SMOKING
Y7110 Heavy smoker - 20-39 cigs/day S SMOKING
Y7467 Light smoker - 1-9 cigs/day S SMOKING
Y7677 Moderate smoker - 10-19 cigs/d S SMOKING
Y9843 Very heavy smoker - 40+cigs/d S SMOKING
YA602 Contented smoker S SMOKING
ZV6D8 [V]Tobacco abuse counselling S SMOKING

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH982/version/2160/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH982/version/2160/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH982', '2160', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH982/version/2160/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH982/version/2160/export/codes/?format=json
CSV site_root/phenotypes/PH982/version/2160/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH982', '2160', api_client=client)

Version History

Version
ID
Name Owner Publish date
2160 CCU002_01 Smoking status ieuan.scanlon 2022-05-17 currently shown
2043 CCU002_01 Smoking status ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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