Phenotypes > CCU002_02 Atrial Fibrillation (AF)

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CCU002_02 Atrial Fibrillation (AF)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

ID
PH987
Version ID
2165
Type
Disease or Syndrome
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Expand All  /  Collapse All
Rows: 29
Code Description terminology code_type
1110851000000100 Quality and Outcomes Framework atrial fibrillation quality indicator-related care invitation (procedure) SNOMEDCT 1.0
120041000119109 Atrial fibrillation with rapid ventricular response (disorder) SNOMEDCT 1.0
134377004 Atrial fibrillation monitoring SNOMEDCT 1.0
15964901000119107 Atypical atrial flutter (disorder) SNOMEDCT 1.0
164889003 ECG: atrial fibrillation SNOMEDCT 1.0
164890007 ECG: atrial flutter SNOMEDCT 1.0
195080001 Atrial fibrillation and flutter SNOMEDCT 1.0
233910005 Lone atrial fibrillation (disorder) SNOMEDCT 1.0
233911009 Non-rheumatic atrial fibrillation SNOMEDCT 1.0
248411000000105 Atrial fibrillation annual review (regime/therapy) SNOMEDCT 1.0
282825002 AF - Paroxysmal atrial fibrillation SNOMEDCT 1.0
300996004 Controlled atrial fibrillation (disorder) SNOMEDCT 1.0
312442005 H/O: atrial fibrillation SNOMEDCT 0.0
314208002 Rapid atrial fibrillation (disorder) SNOMEDCT 1.0
425615007 Chronic atrial flutter (disorder) SNOMEDCT 1.0
426749004 Chronic atrial fibrillation (disorder) SNOMEDCT 1.0
427665004 Paroxysmal atrial flutter (disorder) SNOMEDCT 1.0
428076002 History of atrial flutter (situation) SNOMEDCT 0.0
440028005 Permanent atrial fibrillation (disorder) SNOMEDCT 1.0
440059007 Persistent atrial fibrillation (disorder) SNOMEDCT 1.0
49436004 Atrial fibrillation SNOMEDCT 1.0
5370000 Atrial flutter SNOMEDCT 1.0
711411000000101 Atrial fibrillation monitoring invitation (procedure) SNOMEDCT 1.0
716181000000109 Atrial fibrillation monitoring third letter (procedure) SNOMEDCT 1.0
716721000000107 Atrial fibrillation monitoring telephone invitation (procedure) SNOMEDCT 1.0
716981000000106 Atrial fibrillation monitoring second letter (procedure) SNOMEDCT 1.0
717011000000100 Atrial fibrillation monitoring verbal invitation (procedure) SNOMEDCT 1.0
717221000000101 Atrial fibrillation monitoring first letter (procedure) SNOMEDCT 1.0
720448006 Typical atrial flutter (disorder) SNOMEDCT 1.0
Rows: 1
Code Description terminology code_type
I48 Atrial fibrillation and flutter ICD10 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH987/version/2165/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH987/version/2165/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH987', '2165', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH987/version/2165/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH987/version/2165/export/codes/?format=json
CSV site_root/phenotypes/PH987/version/2165/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH987', '2165', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2165 CCU002_02 Atrial Fibrillation (AF) ieuan.scanlon 2022-05-17 currently shown
2053 CCU002_02 Atrial Fibrillation (AF) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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