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Ankylosing spondylitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH99
Version ID
198
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Ankylosing spondylitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Ankylosing spondylitis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Ankylosing spondylitis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 4
Code Description Disease Medcode Category
2377.00 O/E - ankyl.spondyl.chest def. Ankylosing spondylitis 37400.0 Diagnosis of Ankylosing spondylitis
388p.00 BASDAI - Bath ankylosing spondylitis disease activity index Ankylosing spondylitis 93639.0 Diagnosis of Ankylosing spondylitis
N100.00 Ankylosing spondylitis Ankylosing spondylitis 2184.0 Diagnosis of Ankylosing spondylitis
N100.11 Marie - Strumpell spondylitis Ankylosing spondylitis 40946.0 Diagnosis of Ankylosing spondylitis
Rows: 4
Code Description Disease ReadcodeDescr Readcode
2184.0 Diagnosis of Ankylosing spondylitis Ankylosing spondylitis Ankylosing spondylitis N100.00
37400.0 Diagnosis of Ankylosing spondylitis Ankylosing spondylitis O/E - ankyl.spondyl.chest def. 2377.00
40946.0 Diagnosis of Ankylosing spondylitis Ankylosing spondylitis Marie - Strumpell spondylitis N100.11
93639.0 Diagnosis of Ankylosing spondylitis Ankylosing spondylitis BASDAI - Bath ankylosing spondylitis disease activity index 388p.00
Rows: 1
Code Description Disease Category
M45 Ankylosing spondylitis Ankylosing spondylitis Diagnosis of Ankylosing spondylitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH99/version/198/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH99/version/198/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH99', '198', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH99/version/198/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH99/version/198/export/codes/?format=json
CSV site_root/phenotypes/PH99/version/198/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH99', '198', api_client=client)

Version History

Version
ID
Name Owner Publish date
198 Ankylosing spondylitis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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