Phenotypes > CCU002_02 Chronic Kidney Disease (CKD)

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CCU002_02 Chronic Kidney Disease (CKD)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

ID
PH990
Version ID
2168
Type
Disease or Syndrome
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Expand All  /  Collapse All
Rows: 43
Code Description terminology code_type
129151000119102 Chronic kidney disease stage 4 due to hypertension (disorder) SNOMEDCT 1.0
129171000119106 Chronic kidney disease stage 3 due to hypertension (disorder) SNOMEDCT 1.0
324121000000109 Chronic kidney disease stage 1 with proteinuria (disorder) SNOMEDCT 1.0
324151000000104 Chronic kidney disease stage 1 without proteinuria (disorder) SNOMEDCT 1.0
324181000000105 Chronic kidney disease stage 2 with proteinuria (disorder) SNOMEDCT 1.0
324211000000106 Chronic kidney disease stage 2 without proteinuria (disorder) SNOMEDCT 1.0
324251000000105 Chronic kidney disease stage 3 with proteinuria (disorder) SNOMEDCT 1.0
324281000000104 Chronic kidney disease stage 3 without proteinuria (disorder) SNOMEDCT 1.0
324311000000101 Chronic kidney disease stage 3A with proteinuria (disorder) SNOMEDCT 1.0
324341000000100 Chronic kidney disease stage 3A without proteinuria (disorder) SNOMEDCT 1.0
324371000000106 Chronic kidney disease stage 3B with proteinuria (disorder) SNOMEDCT 1.0
324411000000105 Chronic kidney disease stage 3B without proteinuria (disorder) SNOMEDCT 1.0
324441000000106 Chronic kidney disease stage 4 with proteinuria (disorder) SNOMEDCT 1.0
324471000000100 Chronic kidney disease stage 4 without proteinuria (disorder) SNOMEDCT 1.0
324501000000107 Chronic kidney disease stage 5 with proteinuria (disorder) SNOMEDCT 1.0
324541000000105 Chronic kidney disease stage 5 without proteinuria (disorder) SNOMEDCT 1.0
431855005 Chronic kidney disease stage 1 (disorder) SNOMEDCT 1.0
431856006 Chronic kidney disease stage 2 (disorder) SNOMEDCT 1.0
431857002 Chronic kidney disease stage 4 (disorder) SNOMEDCT 1.0
433144002 Chronic kidney disease stage 3 (disorder) SNOMEDCT 1.0
433146000 Chronic kidney disease stage 5 (disorder) SNOMEDCT 1.0
700378005 Chronic kidney disease stage 3A (disorder) SNOMEDCT 1.0
700379002 Chronic kidney disease stage 3B (disorder) SNOMEDCT 1.0
714152005 Chronic kidney disease stage 5 on dialysis (disorder) SNOMEDCT 1.0
731000119105 Chronic kidney disease stage 3 due to type 2 diabetes mellitus (disorder) SNOMEDCT 1.0
949401000000103 Chronic kidney disease with glomerular filtration rate category G1 and albuminuria category A1 (disorder) SNOMEDCT 1.0
949421000000107 Chronic kidney disease with glomerular filtration rate category G1 and albuminuria category A2 (disorder) SNOMEDCT 1.0
949481000000108 Chronic kidney disease with glomerular filtration rate category G1 and albuminuria category A3 (disorder) SNOMEDCT 1.0
949521000000108 Chronic kidney disease with glomerular filtration rate category G2 and albuminuria category A1 (disorder) SNOMEDCT 1.0
949561000000100 Chronic kidney disease with glomerular filtration rate category G2 and albuminuria category A2 (disorder) SNOMEDCT 1.0
949621000000109 Chronic kidney disease with glomerular filtration rate category G2 and albuminuria category A3 (disorder) SNOMEDCT 1.0
949881000000106 Chronic kidney disease with glomerular filtration rate category G3a and albuminuria category A1 (disorder) SNOMEDCT 1.0
949901000000109 Chronic kidney disease with glomerular filtration rate category G3a and albuminuria category A2 (disorder) SNOMEDCT 1.0
949921000000100 Chronic kidney disease with glomerular filtration rate category G3a and albuminuria category A3 (disorder) SNOMEDCT 1.0
950061000000103 Chronic kidney disease with glomerular filtration rate category G3b and albuminuria category A1 (disorder) SNOMEDCT 1.0
950081000000107 Chronic kidney disease with glomerular filtration rate category G3b and albuminuria category A2 (disorder) SNOMEDCT 1.0
950101000000101 Chronic kidney disease with glomerular filtration rate category G3b and albuminuria category A3 (disorder) SNOMEDCT 1.0
950181000000106 Chronic kidney disease with glomerular filtration rate category G4 and albuminuria category A1 (disorder) SNOMEDCT 1.0
950211000000107 Chronic kidney disease with glomerular filtration rate category G4 and albuminuria category A2 (disorder) SNOMEDCT 1.0
950231000000104 Chronic kidney disease with glomerular filtration rate category G4 and albuminuria category A3 (disorder) SNOMEDCT 1.0
950251000000106 Chronic kidney disease with glomerular filtration rate category G5 and albuminuria category A1 (disorder) SNOMEDCT 1.0
950291000000103 Chronic kidney disease with glomerular filtration rate category G5 and albuminuria category A2 (disorder) SNOMEDCT 1.0
950311000000102 Chronic kidney disease with glomerular filtration rate category G5 and albuminuria category A3 (disorder) SNOMEDCT 1.0
Rows: 26
Code Description terminology code_type
N00 Acute nephritic syndrome ICD10 1.0
N01 Rapidly progressive nephritic syndrome ICD10 1.0
N03 Chronic nephritic syndrome ICD10 1.0
N052 Unspecified nephritic syndrome ; Diffuse membranous glomerulonephritis ICD10 1.0
N053 Unspecified nephritic syndrome ; Diffuse mesangial proliferative glomerulonephritis ICD10 1.0
N054 Unspecified nephritic syndrome ; Diffuse endocapillary proliferative glomerulonephritis ICD10 1.0
N055 Unspecified nephritic syndrome ; Diffuse mesangiocapillary glomerulonephritis ICD10 1.0
N056 Unspecified nephritic syndrome ; Dense deposit disease ICD10 1.0
N072 Hereditary nephropathy, not elsewhere classified ; Diffuse membranous glomerulonephritis ICD10 1.0
N073 Hereditary nephropathy, not elsewhere classified ; Diffuse mesangial proliferative glomerulonephritis ICD10 1.0
N074 Hereditary nephropathy, not elsewhere classified ; Diffuse endocapillary proliferative glomerulonephritis ICD10 1.0
N10 Acute tubulo-interstitial nephritis ICD10 1.0
N17 Acute renal failure ICD10 1.0
N181 Chronic kidney disease, stage 1 ICD10 1.0
N182 Chronic kidney disease, stage 2 ICD10 1.0
N183 Chronic kidney disease, stage 3 ICD10 1.0
N184 Chronic kidney disease, stage 4 ICD10 1.0
N185 Chronic kidney disease, stage 5 ICD10 1.0
N189 Chronic kidney disease, unspecified ICD10 1.0
N19 Unspecified kidney failure ICD10 1.0
N25 Disorders resulting from impaired renal tubular function ICD10 1.0
T861 Kidney transplant failure and rejection ICD10 1.0
Y841 Kidney dialysis ICD10 1.0
Z49 Care involving dialysis ICD10 1.0
Z940 Kidney transplant status ICD10 1.0
Z992 Dependence on renal dialysis ICD10 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH990/version/2168/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH990/version/2168/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH990', '2168', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH990/version/2168/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH990/version/2168/export/codes/?format=json
CSV site_root/phenotypes/PH990/version/2168/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH990', '2168', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2168 CCU002_02 Chronic Kidney Disease (CKD) ieuan.scanlon 2022-05-17 currently shown
2059 CCU002_02 Chronic Kidney Disease (CKD) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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