Phenotypes > CCU002_02 Chronic obstructive pulmonary disease (COPD)

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CCU002_02 Chronic obstructive pulmonary disease (COPD)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

ID
PH991
Version ID
2169
Type
Disease or Syndrome
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Expand All  /  Collapse All
Rows: 5
Code Description terminology code_type
J40 Bronchitis not specified as acute or chronic ICD10 1.0
J41 Simple and mucopurulent chronic bronchitis ICD10 1.0
J42 Unspecified chronic bronchitis ICD10 1.0
J43 Emphysema ICD10 1.0
J44 Other chronic obstructive pulmonary disease ICD10 1.0
Rows: 41
Code Description terminology code_type
10692761000119107 Asthma-chronic obstructive pulmonary disease overlap syndrome (disorder) SNOMEDCT 1.0
135836000 End stage chronic obstructive airways disease (disorder) SNOMEDCT 1.0
13645005 Chronic obstructive lung disease (disorder) SNOMEDCT 1.0
16003001 Giant bullous emphysema (disorder) SNOMEDCT 1.0
185086009 Chronic obstructive bronchitis (disorder) SNOMEDCT 1.0
195949008 Chronic asthmatic bronchitis (disorder) SNOMEDCT 1.0
195953005 Mixed simple and mucopurulent chronic bronchitis (disorder) SNOMEDCT 1.0
195957006 Chronic bullous emphysema (disorder) SNOMEDCT 1.0
195958001 Segmental bullous emphysema (disorder) SNOMEDCT 1.0
195959009 Zonal bullous emphysema (disorder) SNOMEDCT 1.0
195963002 Acute vesicular emphysema (disorder) SNOMEDCT 1.0
196026004 Chronic emphysema caused by chemical fumes (disorder) SNOMEDCT 1.0
196027008 Toxic bronchiolitis obliterans (disorder) SNOMEDCT 1.0
233672007 Byssinosis grade 3 (disorder) SNOMEDCT 1.0
233673002 Drug-induced bronchiolitis obliterans (disorder) SNOMEDCT 1.0
233674008 Pulmonary emphysema in alpha-1 primary immunodeficiency deficiency (disorder) SNOMEDCT 1.0
233675009 Toxic emphysema (disorder) SNOMEDCT 1.0
233677001 Scar emphysema (disorder) SNOMEDCT 1.0
266355005 Bullous emphysema with collapse (disorder) SNOMEDCT 1.0
266356006 Atrophic (senile) emphysema (disorder) SNOMEDCT 1.0
293991000000106 Very severe chronic obstructive pulmonary disease (disorder) SNOMEDCT 1.0
313296004 Mild chronic obstructive pulmonary disease (disorder) SNOMEDCT 1.0
313297008 Moderate chronic obstructive pulmonary disease (disorder) SNOMEDCT 1.0
313299006 Severe chronic obstructive pulmonary disease (disorder) SNOMEDCT 1.0
32544004 Chronic obliterative bronchiolitis caused by inhalation of chemical fumes AND/OR vapors (disorder) SNOMEDCT 1.0
360470001 Chronic mucus hypersecretion (disorder) SNOMEDCT 1.0
40100001 Obliterative bronchiolitis (disorder) SNOMEDCT 1.0
45145000 Unilateral emphysema (situation) SNOMEDCT 1.0
49691004 Occupational bronchitis (disorder) SNOMEDCT 1.0
4981000 Panacinar emphysema (disorder) SNOMEDCT 1.0
52571006 Chronic tracheobronchitis (disorder) SNOMEDCT 1.0
61937009 Simple chronic bronchitis (disorder) SNOMEDCT 1.0
63480004 Chronic bronchitis (disorder) SNOMEDCT 1.0
66987001 Congenital lobar emphysema (disorder) SNOMEDCT 1.0
68328006 Centriacinar emphysema (disorder) SNOMEDCT 1.0
74417001 Mucopurulent chronic bronchitis (disorder) SNOMEDCT 1.0
77690003 Interstitial emphysema of lung (disorder) SNOMEDCT 1.0
84409004 Fetid chronic bronchitis (disorder) SNOMEDCT 1.0
866901000000103 Eosinophilic bronchitis (disorder) SNOMEDCT 1.0
87433001 Pulmonary emphysema (disorder) SNOMEDCT 1.0
89549007 Catarrhal bronchitis (disorder) SNOMEDCT 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH991/version/2169/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH991/version/2169/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH991', '2169', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH991/version/2169/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH991/version/2169/export/codes/?format=json
CSV site_root/phenotypes/PH991/version/2169/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH991', '2169', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2169 CCU002_02 Chronic obstructive pulmonary disease (COPD) ieuan.scanlon 2022-05-17 currently shown
2061 CCU002_02 Chronic obstructive pulmonary disease (COPD) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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