Phenotype Library | phenotype: CCU002_02 Pulmonary Embolism (PE)

CCU002_02 Pulmonary Embolism (PE)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

PH994

Version ID

2172

Type

Disease or Syndrome

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results

Valid event data range

08/12/2020 - 18/03/2021

Sex

♀ Female ♂ Male

Agreement Date

2021-08-23

Coding system

ICD10 codes SNOMED CT codes

Collections

BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

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XML

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C2855/7376 CCU002_02 Pulmonary Embolism (PE) - Phenotypes - England primary care EHR: Pulmonary embolism diagnosis - SNOMED CT codes

Rows: 2

Code	Description	terminology	code_type
133971000119108	Chronic pulmonary embolism (disorder)	SNOMEDCT	1.0
438773007	Recurrent pulmonary embolism (disorder)	SNOMEDCT	1.0

C2856/7377 CCU002_02 Pulmonary Embolism (PE) - Phenotypes - England hospitalization EHR: Pulmonary embolism diagnosis - ICD10 codes

Rows: 3

Code	Description	terminology	code_type
I26	Pulmonary embolism	ICD10	1.0
I26.0	Pulmonary embolism without mention of acute cor pulmonale	ICD10	1.0
I26.9	Pulmonary embolism with mention of acute cor pulmonale	ICD10	1.0

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH994/version/2172/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH994/version/2172/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH994', '2172', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH994/version/2172/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH994/version/2172/export/codes/?format=json
CSV	site_root/phenotypes/PH994/version/2172/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH994', '2172', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2172	CCU002_02 Pulmonary Embolism (PE)	ieuan.scanlon	2022-05-17	currently shown
2067	CCU002_02 Pulmonary Embolism (PE)	ieuan.scanlon	2022-05-09