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CCU002_02 Sudden Cardiac Death (SCD)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH995
Version ID
2173
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 1
Code Description terminology code_type
95281009 Sudden cardiac death (disorder) SNOMEDCT 1.0
Rows: 6
Code Description terminology code_type
I460 Cardiac arrest with successful resuscitation ICD10 1.0
I461 Sudden cardiac death, so described ICD10 1.0
I469 Cardiac arrest, unspecified ICD10 1.0
I470 Re-entry ventricular arrhythmia ICD10 1.0
I472 Ventricular tachycardia ICD10 1.0
I490 Ventricular fibrillation and flutter ICD10 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH995/version/2173/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH995/version/2173/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH995', '2173', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH995/version/2173/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH995/version/2173/export/codes/?format=json
CSV site_root/phenotypes/PH995/version/2173/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH995', '2173', api_client=client)

Version History

Version
ID
Name Owner Publish date
2173 CCU002_02 Sudden Cardiac Death (SCD) ieuan.scanlon 2022-05-17 currently shown
2069 CCU002_02 Sudden Cardiac Death (SCD) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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