Phenotype Library | phenotype: CCU002_02 Sudden Cardiac Death (SCD)

CCU002_02 Sudden Cardiac Death (SCD)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type

Disease or Syndrome

PH995

Version ID

2173

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results

Valid event data range

08/12/2020 - 18/03/2021

Sex

Female, Male

Agreement Date

2021-08-23

Coding system

ICD10 codes SNOMED CT codes

Tags /Collections

BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

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JSON

XML

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C2857/7378 CCU002_02 Sudden Cardiac Death (SCD) - Phenotypes - England primary care EHR: Sudden Cardiac Death diagnosis - SNOMED CT codes

Rows: 1

Code	Description	terminology	code_type
95281009	Sudden cardiac death (disorder)	SNOMEDCT	1.0

C2858/7379 CCU002_02 Sudden Cardiac Death (SCD) - Phenotypes - England hospitalization EHR: Sudden Cardiac Death diagnosis - ICD10 codes

Rows: 6

Code	Description	terminology	code_type
I460	Cardiac arrest with successful resuscitation	ICD10	1.0
I461	Sudden cardiac death, so described	ICD10	1.0
I469	Cardiac arrest, unspecified	ICD10	1.0
I470	Re-entry ventricular arrhythmia	ICD10	1.0
I472	Ventricular tachycardia	ICD10	1.0
I490	Ventricular fibrillation and flutter	ICD10	1.0

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH995/version/2173/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH995/version/2173/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH995', '2173', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH995/version/2173/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH995/version/2173/export/codes/?format=json
CSV	site_root/phenotypes/PH995/version/2173/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH995', '2173', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2173	CCU002_02 Sudden Cardiac Death (SCD)	ieuan.scanlon	2022-05-17	currently shown
2069	CCU002_02 Sudden Cardiac Death (SCD)	ieuan.scanlon	2022-05-09