Coronary heart disease not otherwise specified
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH41 / 82 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesRead codes v2Med codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
Use MODIFIED CALIBER 'Coronary heart disease not otherwise specified' phenotyping algorithm
At the specified date, a patient is considered to have had 'Coronary heart disease not otherwise specified' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date.
- No previous records meeting the criteria for stable angina OR unstable angina OR myocardial infarction
AND {
Primary care: chd_nos_gprd: category 1, 3
a) IF Read code in chd_nos_gprd list, THEN chd_nos_gprd= appropriate category
b) OR IF enttype = 16, chd_nos_gprd = 1 OR
Secondary care: chd_nos_hes: category 3 }
Implementation
Phenoflow IDImplementation
Clinical Code List
PUBLISHED - 31 Codes
PUBLISHED - 31 Codes
PUBLISHED - 8 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH41 / 82 - Coronary heart disease not otherwise specified. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH41/version/82/detail/. [Accessed 30 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH41/version/82/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH41',
version_id=82
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH41',
version_id=82
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH41/version/82/export/codes/?format=json CSV site_root/phenotypes/PH41/version/82/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH41',
version_id=82
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH41',
version_id=82
)Version History