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CCU002_02 Obesity, body mass index (BMI)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH989
Version ID
2167
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 7
Code Description terminology code_type
162864005 Body mass index 30+ - obesity (finding) SNOMEDCT 1.0
408512008 Body mass index 40+ - severely obese (finding) SNOMEDCT 1.0
914721000000105 Obese class I (body mass index 30.0 - 34.9) (finding) SNOMEDCT 1.0
914731000000107 Obese class II (body mass index 35.0 - 39.9) (finding) SNOMEDCT 1.0
914741000000103 Obese class III (body mass index equal to or greater than 40.0) (finding) SNOMEDCT 1.0
921031000000102 Child body mass index 98.1st-99.6th centile (finding) SNOMEDCT 1.0
921051000000109 Child body mass index greater than 99.6th centile (finding) SNOMEDCT 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH989/version/2167/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH989/version/2167/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH989', '2167', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH989/version/2167/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH989/version/2167/export/codes/?format=json
CSV site_root/phenotypes/PH989/version/2167/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH989', '2167', api_client=client)

Version History

Version
ID
Name Owner Publish date
2167 CCU002_02 Obesity, body mass index (BMI) ieuan.scanlon 2022-05-17 currently shown
2057 CCU002_02 Obesity, body mass index (BMI) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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